G188920 (lrig1)


Basic Information

Item Value
gene id G188920
gene name lrig1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 11083225 ~ 11083708 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256065
ttttatggaggtgcagatttcattttcctgcaggacttggcacactgcccacagtcttttataatattctaattttctaagacactgatttttggattttcattggctgtaaaacaatcaacaataaaagaaataaaggcttaaaaaaagatcactctgtgtgtaacgtTTTAGTGATGTTCTAACTGCATAAAGAACAACTATGGCAGCTTTATTTACCTCTTCTGTCGCTCTGTTTCTTCTGTAATGACCTGTCGTGGTTGCTGGGGAAGATGGGCTGGGGGTCTCTCCGTACCCCGTTGGGTGTGCCATTGCAGTGTGTGTCTCCTGTCCTGTGGCTGGTGAAGGTTGAGGGAGGCGGAGACTGCTGGTACTCTGAACCTGAAGGGGGCGCTATTCCGTGGGGGAGGTAGTCTGATGGCTTGGAGTAGGTAGAGCTGTTTTCCATGCAGTCTGTGCAGAGCACCGGAACGTCGAAGCCTCC

Function

symbol description
lrig1 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axis; central nervous system; notochord; pharyngeal arch 3-7 skeleton; and somite. Orthologous to human LRIG1 (leucine rich repeats and immunoglobulin like domains 1).

NR:

description
PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256065 True 484 lncRNA 0.46 1 11083225 11083708

Neighbor

gene id symbol gene type direction distance location
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding upstream 12870 10997339 ~ 11070355 (+)
LOC103026179 asic1,asic1b,LOC107721241 coding upstream 119416 10475939 ~ 10963809 (+)
LOC103041410 asic1b,LOC107569540 coding upstream 343550 10738054 ~ 10739675 (+)
LOC111195375 NA coding upstream 862095 10220542 ~ 10221130 (+)
LOC111195374 NA coding upstream 868277 10214359 ~ 10214948 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding downstream 173450 11257158 ~ 11266360 (+)
LOC103022498 LOC108434863 coding downstream 189729 11273437 ~ 11303246 (+)
LOC111195454 NA coding downstream 475674 11559382 ~ 11562194 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding downstream 1127037 12210745 ~ 12226480 (+)
LOC103043660 arpc4,LOC103043660,LOC103358720 coding downstream 1161761 12245469 ~ 12250437 (+)
G188919 NA non-coding upstream 2254 11078643 ~ 11080971 (+)
G188912 NA non-coding upstream 28273 11053952 ~ 11054952 (+)
G188909 NA non-coding upstream 51901 11030529 ~ 11031324 (+)
G188907 NA non-coding upstream 56417 11026384 ~ 11026808 (+)
G188906 NA non-coding upstream 72597 11009415 ~ 11010628 (+)
G188921 lrig1,LOC107557776,LOC107716980,LOC107600281 non-coding downstream 979 11084687 ~ 11085192 (+)
G188922 lrig1,LOC107699792,LOC107716980,LOC107753782,LOC107557776 non-coding downstream 4242 11087950 ~ 11088216 (+)
G188925 NA non-coding downstream 23732 11107440 ~ 11114781 (+)
G188927 NA non-coding downstream 69897 11153605 ~ 11155346 (+)
G188949 NA non-coding downstream 142628 11226336 ~ 11227393 (+)
G188771 NA other upstream 230489 10848071 ~ 10852736 (+)
G188624 NA other upstream 779560 10303360 ~ 10303665 (+)
LOC111195371 NA other upstream 976695 10101755 ~ 10106530 (+)
G188325 NA other upstream 1226230 9854307 ~ 9856995 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other upstream 1263270 9283795 ~ 9819955 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other downstream 6020 11089728 ~ 11090047 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other downstream 367671 11451379 ~ 11464480 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other downstream 607164 11690872 ~ 12000663 (+)
G189073 hmces other downstream 1147079 12230787 ~ 12236092 (+)
G189141 NA other downstream 1355895 12439603 ~ 12440733 (+)

Expression


Co-expression Network