G192336


Basic Information

Item Value
gene id G192336
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23216176 ~ 23224603 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU260962
CTTCTGAGGAAACCCATTTCGGCCGCTTGTATTCGCAACCTCGTTCTTTCGGTCGTGACCCATCGCTCATGACCATTGGTAAGAGGAACAAAGATAGACTGGTAGGTCGAGAGCTTTGCTTTTTTGCTCTGCTCCCTTTTCGCCACAACAGTGCGGTAAAGCGAACGCAATACCGCCCATGCCGAGACGATTCTCCGGTCAATCTCGCGCTCCATCCTTCCCTCACTCGTGAACAAGACCCCGAGATACCTAAACTCCTTCAATTGGGGCAAGCACTCACCCCCCACCTGGAGTAGACATACCATTGGTTTCCTACAGAGAACCGTGGCCTCTGATTTAGAGGTGCTTATCCTCATCCCTGCCGCTTCACACTCAGCTGCAAACCAATTCAGTGAGCGCTGCAGGTCGCAGGATGATGATGCCATTAGGACCACATCATCCACAAAAAGCAGCGATGCAGTCCTTTGGACACCAAACTGCAGACCCTTTCTCCCCCGACTACACCTCGATATCCtgtattttatcaaaatacTTATCACAATTCACAAAATCACgaacaaactaaaaaatatttcatatttcctGCAAAATGAAGCACTGCAACCAAAACTACACATAGCATTATCAAAATCATACTTTTGAACCAAATAGCACAAACTTCATTCATATTACCAGATTTTAATCTAATCAACTGCACACTGTTGGGCATAATGAAAAGCATTATTATATAAGTTTTTAATGGCAGCTTCCTGTACCCTGGAAAACATTTGGCCCTTTCCTCCACCAAGGTTGCATCTTTCAGTTTAagcaaaattaaaacataagcTACTGCTTGGACAATGTGTAATGAGACAGCTACCCTAAAGGTAAGATCCAGATAGCTGTCTCAGATTGTATTTAACCTGGTGAAATATAGCACCAGGATGAACTCAAAAGCAAATATGGGAGAATTGCATTGAGCTGGGTTTGAACCCAGACCGTTTGTGTGAAGGGCCAATGAGTAGACCACAACACTATAGAGGGCTATGAGTGATTAGTGACTGTAGGTGCTTTAACACTGGGGGCAGGGTATAGAACaccaaataattaaacaaactaaagtGTAAGAGTAGAAAGAACTGTTTTACTGTGGcgaaatgaaagaaatgaagaCACAAAGCGACAGTATAAGGTttgaaaaagttaaaataaaaattgtggaGAGCGGGGTTTGAACACCCGCGAGAATGGGCTCTGAGGCGCAGAGACCCCAGCCTACACACTGCGCCACCGGGGACGAGCCGATGACGTCAGCGCCGGAAAGAACTAAATGACTCGCGGCAAGCGGAGCGCGAGCAAAGTAAACGAagtgaaagaaaataataataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260962 True 1369 lncRNA 0.44 2 23216176 23224603

Neighbor

gene id symbol gene type direction distance location
LOC103045076 gpr25 coding downstream 53757 23159668 ~ 23162419 (-)
c22h1orf106 LOC108410711,LOC107727857,LOC107655074 coding downstream 71768 23104254 ~ 23144408 (-)
rnpep rnpep coding downstream 117612 23087526 ~ 23098564 (-)
LOC103045443 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107749489 coding downstream 134048 23074119 ~ 23082128 (-)
LOC103044418 adipor1 coding downstream 143974 23063167 ~ 23072202 (-)
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 384650 23609253 ~ 23622118 (-)
LOC103042624 rbm39,LOC107655082,LOC107727761,LOC107602070 coding upstream 400307 23624910 ~ 23635826 (-)
LOC103041805 gem,rem1,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107685743,LOC107554936 coding upstream 423663 23648266 ~ 23660292 (-)
LOC103042306 NA coding upstream 448505 23673108 ~ 23680391 (-)
LOC103041505 pnp4a,LOC103041505,LOC108411380,LOC107727193,LOC107685744,LOC107655042,LOC107727769,LOC107559547 coding upstream 457606 23682209 ~ 23696247 (-)
G192293 NA non-coding downstream 61134 23154582 ~ 23155042 (-)
G192288 NA non-coding downstream 110549 23105108 ~ 23105627 (-)
LOC111195460 NA non-coding downstream 115188 23098838 ~ 23100988 (-)
G192240 NA non-coding downstream 185106 23030652 ~ 23031070 (-)
G192232 NA non-coding downstream 253367 22961247 ~ 22962809 (-)
G192365 NA non-coding upstream 104471 23329074 ~ 23329313 (-)
G192428 NA non-coding upstream 319932 23544535 ~ 23559176 (-)
G192439 dvl1,LOC108411373,LOC107685713,LOC107560111,LOC107749512,LOC107655081,LOC107727776 non-coding upstream 377716 23602319 ~ 23607031 (-)
G192484 NA non-coding upstream 652032 23876635 ~ 23884538 (-)
G192574 NA non-coding upstream 767593 23992196 ~ 24049734 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 157371 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 412534 22786163 ~ 22803642 (-)
amhr2 NA other downstream 493271 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 853718 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1364534 21846969 ~ 21851642 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 814643 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 1987072 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2650307 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3486650 26711253 ~ 26724106 (-)
G193097 NA other upstream 3807060 27031663 ~ 27033089 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G192329 LOC108281047 non-coding NC_053130.1 CM020927.1 7122200 ~ 7123178 (+)