G193477


Basic Information

Item Value
gene id G193477
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28395697 ~ 28469608 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU262559
ctctcagggctcaggcagctgatggcaagctacatgaacaggatcctgatcatagtggcagcacttagcctgctggaccatgTGGAGCCCCGATTGGAATAAGAGATTTTtatgagctggattttttttttgcaggattCACTGAGTAAGCTGTAGTTTTTATGACAATGACATAACAGCTTATTCCAGcagaaataactttaaaaaaaataactttaataaccTTTAAGTCTATATAAATGTCCTGGCTAAATGTAGGTTTATGTCACGGTCATGAAAGGTTTATACAGCCTTATAAACACTTCCATTCAGTAAACAGCAACATTTTCAAATAACACATTCATGGTCAAAGCATGCACTATGCACTACGTTTGATTTAATGGCACATAAATGTTTTAACGCTAAAAGCCTAGACACAGTAAGGCCCATTTTGATGAATACCGGCACTGGACACGGTCCTGTCCGCCCAAAGGCACAAAGCCATTTAAAGACATATTCAAGAAGATCATACATGCAGCACAGTTACATGAATCAATCAGGCAGATATTAGATAGATTAGGTAGTGTTAATCTAGTGATTAATAGTAGATTACACTTATTATGATATATTTGCaataaatgtacaattttaTCTGTATCTAAAATAGAGCCTGTAATATAGAGCTTTTTGCTGATATGCCACAatgatataatattaaatacaatttatctATCAACAAACTTTCACAGCTTACAACTTCACATTAACCCAACCCCAAATATAACAGGGAAACAAACATATTTAGTAGCAAAActggaaaacaacaacaaaaacacaatgggTCTGTATAACATACATAACAGTACATAACATATGTAACATTTCTTTAGATAACAATTTGTGCGTCTCTCCTTGTTTGGACTATGTTAAACATAGTACCTATTTATGTGTTACACATAAGCTTCTGTTCAGGCCGTGTGTGGAGTGGCTTTATTCCTAAAATGCTCTAAAACAATGCAAGACcaagtagtagtgtagtttatCTTTGGTCAAAGGTCATTttttgtgggggaaaaaaaaatcagctaaaTTGTGTAAGCTCTCCTCTTCAATAATATAAGAGTTCGGGCAGGCCCATAATATGATGGTAAACAATAAATTGTTTACCACTTAGGAGTGTAATGGCACGTGTATTTGTTCTGGACCGTTACAGTTCAGGGTCACTGAACATGTCGCGCACTATTAgggtaaatacagtaattttacaCACTTGTGTCACCCGAAAACATTACAATTGCACAGTAAATGCCTGATGTGCACACGTACCTAAGTATTTATCTGatgttttagctttagcacCTTATGATATAATTTTTCATTGGACGATGAGTCAGTTGTTGGGGATGCATGTGGAAACACTCTGTGTACTGTTATACCCTTTTTACCAATGAgatgatttcatattttatttcatcTGGTCAACAATTAAAGATGTTAGATAATAGCTCAGTGCTGACTGATGTGATTGTCAGTTAGCAGTTGTGAATTGTCAGCAAGTAAACAACAGAAACAGGAGCAGAGCTTCCTAGTATTAGTTATTACAGTTATGTGTGTTATTTGGTTATTATATATTGAGATTTTCTCTCAATTTTATCATGGGCAGGTTGGGTGAATTTTAGCCATATTTccattttactcttttactgaGTAGGATAACCATTTGTTAGATTGTTAGATATGAtgtgtgtattatgtttatAGTTCACTCAAGTCTTCAATTATGAAGCTTTGAAAACTGGCATGTAGCTGCCAGATCAACCTGGGCAAAGAACAGCAAACAAAACACAGCTGCCACCTCAACAATGTTGGCCCaagatgctaactgtttttctgagctggattactcactgataCTTAATAGTAGATTAAACAGTTTAATATGATATCATATGTGTCATGCCTGTATGTTACTCAGGTTTTAAAGTATGAAGCTCAGGATACCGGCACATAGTTGCCGACTGAATAAGTGATATTAAaatatcgaaaatgtgtttaaaaattgtattaccATTATTGAAAACTTGCTACCTTTCTGTAATCTTCTGCTAATAGTACTGGCTTCTGGTTGTAAAATATGATCCTAAAGAAAAAATTGTGAATGTATTTGAGATGACTTTGTTAGTGTAACAATGATAATGCttcataataatattacattttaagcaGTTTAGAATCCGTAGAAGCTAATCCGTAGAAGCTAAATTTCATTAGCTAAATTTTAATGCCATCCAGGCTCAGTACATCTTTAGTGTACATGTAATTTTGAAATACTCAACACAAGACATACcgaatattacattaaaatgtgtgGCCTTTGACCTGTTCacctatatttaaaacaatacattcaCTTTTAGAAACATGGCATCACCCAAGAGCCGTCTTTTACATTAAGGCATCCCACGCTAAGGATCATTACAGCCTGGCTTCTATACATTGTACATGTTgctataaacaaacattttagctCTTTAGAGGGCACATGCAAATATGCAGAGTTCTTGGACTTCCTGTGCAGTGGGCTGATGGAAAATGTAGTCCAGTCATGGATGGAGCTGGCAGGGCCGTAAAGAGTAGTAGTATTTGTGTTAAGTTGTGCGTGACGTCGGCTATTGAGAGTCTGTTGGGCTATTCAGAAGCGGAAGCAGTCAGCAGCTTCTTCTGAGCTGTCAGAGTCGATTCCTTCACACAAGGGTTCCtaaaaacatcacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262559 True 2756 lncRNA 0.36 2 28395697 28469608

Neighbor

gene id symbol gene type direction distance location
LOC103024327 NA coding downstream 66409 28323355 ~ 28329288 (-)
LOC111195424 NA coding downstream 87649 28302568 ~ 28308048 (-)
LOC111195423 NA coding downstream 94689 28296305 ~ 28301008 (-)
LOC103025279 tmcc1b,LOC108436190,LOC107746889,LOC107755185,LOC107696833,LOC107656050 coding downstream 100729 28269957 ~ 28294968 (-)
LOC103044024 LOC108436218 coding downstream 127757 28253784 ~ 28267940 (-)
LOC103046446 LOC108436063,LOC107728611,LOC107656039,LOC107600301 coding upstream 76971 28546579 ~ 28570942 (-)
LOC103042433 taf4,LOC108436032 coding upstream 682113 29151721 ~ 29173495 (-)
LOC103040895 LOC108436021 coding upstream 707738 29177346 ~ 29219008 (-)
LOC103042113 LOC103042113,LOC108435091 coding upstream 763904 29233512 ~ 29254829 (-)
LOC103040276 NA coding upstream 800313 29269921 ~ 29278564 (-)
G193435 qrich1,LOC107729405,LOC107558890 non-coding downstream 76993 28317344 ~ 28318704 (-)
G193426 NA non-coding downstream 150995 28243808 ~ 28244702 (-)
G193424 NA non-coding downstream 159228 28235165 ~ 28236469 (-)
G193411 NA non-coding downstream 229616 28165841 ~ 28166081 (-)
G193386 NA non-coding downstream 328016 28067474 ~ 28067681 (-)
G193540 NA non-coding upstream 126043 28595651 ~ 28596007 (-)
G193568 NA non-coding upstream 406309 28875917 ~ 28930921 (-)
G193637 NA non-coding upstream 706306 29175914 ~ 29176124 (-)
G193638 NA non-coding upstream 706847 29176455 ~ 29176865 (-)
LOC111195426 NA non-coding upstream 758096 29227704 ~ 29232967 (-)
LOC111195422 si:dkey-33m11.6,LOC108411515,LOC108255079,LOC107572850,LOC107714486,LOC107680422 other downstream 182627 28194379 ~ 28213070 (-)
tmem167b tmem167b other downstream 380085 28010991 ~ 28015612 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other downstream 694366 27425042 ~ 27701331 (-)
LOC111195340 NA other downstream 1004126 27390794 ~ 27391571 (-)
G193097 NA other downstream 1362608 27031663 ~ 27033089 (-)
LOC111195343 LOC108434908 other upstream 106499 28576107 ~ 28586222 (-)
G193541 NA other upstream 127947 28597555 ~ 28598638 (-)
G193737 NA other upstream 1696153 30165761 ~ 30180126 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other upstream 2340186 30809794 ~ 30830957 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other upstream 2700690 31170298 ~ 31194049 (-)

Expression


Co-expression Network