LOC103038379 (LOC107662820,LOC103362894)


Basic Information

Item Value
gene id LOC103038379
gene name LOC107662820,LOC103362894
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17131341 ~ 17158655 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682478.1
tctgtctgtctgtctgtctgtctgtctgttggaATGAATGATTCTCCATCGGTTCACTGCACGGTTGCCGTGGCAGCCAAGTCCCATCCCCTAGCTGTCACTGATTGGGTGGCGTGGGTGGGTTTGTGTGCgctggccccgcccacttcaGTGCAGTGGGAGTTTCTTCTGTCATCACTCTGCGTCCTGCAGCAGACTGCgagtgtgtgagtaagtgtgtgtgtgtgtgcagcgaccTGCAGAGGGGTGTgtatgaaagtgtgtgtgtgtgtatgagtgtgtgttagtgtgtgtatgagtgtgagagagggagagaggacgGCGGTCAGCATGTCGGCGTCCGGCACAAACAAACCCAAAACTCCCCTCAGGAAAAGAGGAAGCCTTCAGAACACCTGCAGCACagctGCAGATTCCCGCGGAGATTCGGGGCAGAGCATTCTCTCGACCCAGCGCTCTCTCCCAGGAACCCCCATCTCACACAAACACTTCCCCATCGACCTGAGAACATCCATGGACGGGAAGTATAAAGACATCGCTGAGgagctGCTGGCTCGCAGTCTGGCGGACAGTGAGATGCGCAGCGCTCCATACGAGTTTCCAGAGGACAGTCCAATCGAACAGCTGGAGGAGAAACGCCACCGATTAGAGAGACAGATCAGCCAGGacatcagGCTAGAGCCGGAGATTCTGCTGAGAGCCAAACAGGACTTCCTGAAAATCGACAGCACAGCTGATCTGGAGAATCTGAAAGATCAGGATGAGGTAACGGTGGACTATGCTCCTAAAGAGCTGCTGGTGGAGAGAGAGTTTCAGCGCGTCTCCATCTCTGGAGAGGAGAAGTGTGGGGTTCCCTTCACTGACCTGGTGGACGCGGCGGAGTGTGTGGTCAGAGCTCTGTTTATCAGAGAGAAGTACATGTCCGAGTCTCTGCAGGGCTTCTGCAGCACCACCGCCCGCCTGCTGCAGGACCTGTCCGaccgcccactgcactgcagCCCACAGGGGGCGGAGCCTGAGACACCTGTAGCTGCAGatgcTACAGTGCACCCTCCGGTCAGTCGGACTCACCCCTATGAGGGTCAGGACCCCAAGAATCTGCCTTCAGACGTGGGCTACACCTGCAAGATGGTGGACGGAGTGGTCCATGTTTATACCAAACGCAGCCCTCTGGACAAGACTACAGAGCTGGATCTGCCGTATCCTAACCTGCAGGACTACATCGCTGATATGAACGTAATGATGGCTCTCATCATCAACGGCCCGGTGAAGTCGTTCTGTTATCGGCGGCTGCAGTACCTCAGCTCCAAGTTCCAGATGCACAGCCTGCTGAACGAGATGAAGGAGCTCGCGGCCCAGAAGAAAGTCCCTCACCGAGACTTTTACAACATCCGTAAGGTGGACACACACATCCACGCCTCCTCCTGCATGAATCAGAAGCACCTGCTGCGCTTCATTAAAAGCGCTATGAAGAAGTATCCGGAGGAGATTGTGCGCATGGAGGGTGGGCGGGGCCAGACGCTGATGGACGTATTCGAGAACATGAACCTGACGGCCTACGACCTCAGCGTCGACACGCTCGACATGCACGCggtaaGGAACACGTTCCACCGCTTCGACAAGTTTAATTCCAAATACAACCCGATCGGAGAGTCCATCCTGCGGGAAATCTTCATCAAAACTGACAACCATATCCACGGCAAATACTTCGGCCACATCGTGAAGgaGGTCATGTCTGATCTGGAGGAGAGTAAGTATCAGAACGCTGAGCTCCGTCTGTCCATCTACGGACGCTCGAGGGACGAGTGGGACAAACTGGCTCTGTGGGCGACGACACACTCCGTCTACTCCCCCAATGTCTGCTGGCTCGTTCAGATCCCACGCCTGTTTGATGTGTATCGCAGTAAGAGGCAGTTGGGGAATTTTCAGCAGATGTTGGAGAATATTTTCCTGCCTCTGTTTGAGGTGACGGTTAACCCCCAGAGCCACCCAGACCTGCACCTGTTCCTGCAGCATgtggtgGGTTTTGACAGTGTGGATGATGAATCGAAGCCGGAGCATCACGTGTTTAATCTGGACAGCCCTCTACCTGAGAACTGGACTGAGGAGGACAATCCTCCCTACTCCTACTACCTGTACTACACCTACGCTAACATGACCGTACTGAACCACCTGCGCagGAGGCGGGGCTTCCACACCTTTGTGTTGCGACCTCACTGTGGGGAGGCGGGGCCTATTCACCACCTGGTGTCAGGGTTTATGCTGTCTGCTAACATCTCGCATGGACTTCTGCTGAGAAAGgcTCCTGTGCTGCAGTACCTGTACTACCTGGCCCAGGTGGGCATCGCCATGTCCCCCCTCAGCAACAACAGCCTCTTCCTCAGTTACCATAGAAACCCGTTGCCGGAGTACCTGTCCCGTGGACTGATGGTGTCGCTGTCCACCGACGACCCTCTGCAGTTCCACTTCACCAAgGAGCCCCTGATGGAGGAGTACAGTATTGCAGCTCAGGTGTGGAAGCTCAGCTCATGTGATATGTGCGAGTTATCCCGGAACAGTGTGCTGATGAGCGGCTTTTCACACAAgACGAAGAGGTACTGGCTGGGTCCGGATTATTCCCGCGAGGGTCCGGAGGGGAACGATATCCGGCGCTCGAACGTTCCGGATATCCGGGTGGCGTTCCGACACGAGACGCTGTGTGAGGAGCTGCAGCTGATCACCCACGCTGTTCAAACACAGGGCCTGGAAGCAATAAGCATTCAGGAGGACGCCCCGCTCACCATGAACCCTTTACCTTCTGCacgctgaacacacacacacaccacacacacacacacacacacacaccccacacacacacacacacacacacacacacacacacacacacacacacgtaaacTCTCCACAAAGCCAAGGATTACTGCGGGTGCCTCTGTCTTGTCCAGCATGCTATtattacctctctctctctatctctttatctctctatctctctttcttttgatttttttcactATCTGTATc

Function

NR:

description
PREDICTED: AMP deaminase 2-like isoform X1

GO: NA

KEGG:

id description
K01490 AMPD; AMP deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682478.1 True 3027 mRNA 0.55 19 17131341 17158655

Neighbor

gene id symbol gene type direction distance location
strip1 strip1,LOC106565664 coding downstream 7720 17110671 ~ 17123621 (-)
LOC103037092 ece1,LOC107727859,LOC107691323,LOC108255065,LOC107749422,LOC106582992 coding downstream 123642 16966216 ~ 17007699 (-)
LOC103036783 NA coding downstream 176647 16886711 ~ 16954694 (-)
cstf1 cstf1 coding downstream 246745 16875408 ~ 16884596 (-)
fam120a fam120a,LOC107685640,LOC107691381 coding downstream 303904 16796868 ~ 16827437 (-)
LOC111195389 NA coding upstream 4161 17162816 ~ 17178813 (-)
wdr77 wdr77 coding upstream 67023 17225678 ~ 17234938 (-)
LOC111195392 LOC108414075 coding upstream 108585 17267240 ~ 17285794 (-)
LOC103026358 LOC105900309,LOC100136526 coding upstream 150756 17309411 ~ 17336942 (-)
LOC103036700 LOC108415149 coding upstream 184345 17343000 ~ 17356073 (-)
G190783 NA non-coding downstream 206 17125493 ~ 17131135 (-)
G190758 NA non-coding downstream 25673 17020911 ~ 17105668 (-)
G190769 alpl non-coding downstream 75219 17053147 ~ 17056122 (-)
G190754 NA non-coding downstream 87333 16993348 ~ 17044008 (-)
G190756 NA non-coding downstream 110905 16999579 ~ 17020436 (-)
LOC111195391 NA non-coding upstream 77926 17236581 ~ 17238451 (-)
G190827 NA non-coding upstream 91542 17250197 ~ 17251702 (-)
G190816 NA non-coding upstream 140289 17298944 ~ 17299699 (-)
G190818 NA non-coding upstream 255852 17414507 ~ 17415735 (-)
G190813 NA non-coding upstream 257304 17415959 ~ 17416966 (-)
cass4 NA other downstream 261880 16833850 ~ 16869461 (-)
ptpdc1 NA other downstream 532024 16569623 ~ 16599317 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other downstream 670413 16345701 ~ 16460928 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 1664757 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 1809166 15318643 ~ 15322175 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 22459 17181114 ~ 17193747 (-)
G190788 NA other upstream 58666 17217321 ~ 17219780 (-)
mrpl20 mrpl20 other upstream 980708 18139363 ~ 18213530 (-)
LOC111195395 NA other upstream 1008585 18167240 ~ 18176164 (-)
LOC103041510 LOC108414096 other upstream 1152797 18311452 ~ 18315337 (-)

Expression


Co-expression Network