LOC111195428 (kdm1b)


Basic Information

Item Value
gene id LOC111195428
gene name kdm1b
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31904235 ~ 31907805 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682808.1
gtgtagtgattggtgtagtgactctgcagaaagttgatgaactctgtgcactatgctccttAGCATCCGCTGACCCggttctgttattttacactgacagagcacagagtcgctgttgttctcagtctcttccactgtgttataatatcactgacagttggctgtggaatatttagtagtaagTAGTGAAATTTTATGACTGGATTTAGTTGCTGCATAAAACTAAACATGTTGCATGATGTTTTACCAGTAGGCCTCACTGTACTAGGTTGAGATGATTGATCTTCTCTTTCAGATCGCTCTGCAGTTCCCTTACAGATTCTGGGACAGTAAAGTGAAGGGTGCAGATTATTTTGGTCATGTTCCCCCGAGTCCAGAGAAGAGAGGGTTGTTCAGCGTGTTTTATGACATGACTCCAAAGGGAGGGCAGTGTGTGCTAATGTCTGTGATAACGGGAGAAGCGGTGGCATTAGTGAAGGATCTGGAGGAGAAAGCAGTGGTTCAGCTCTGCATGAATGTCCTCAGGGAACTCTTCAAGGAACAGGAGGTTCCAGATCCGTTAAAGTTCTTCATGACTCATTGGAGTAAAGACGTGTGGTCTCAGATGTCCTACAGCTTTGTGAAGACTGGAGGCAGTGGAGAGGCCTATGACATCATCGCTGAAGATGTGCAGGGCAAAGTTTTCTTCGCCGGCGAGGCCACAAACCGGCACTTTCCTCAGACAGTAACGGGTGCTTATTTGAGCGGAGTACGGGAAGCCAGTAAAATCGCAGCACTGTAAGCTCTGGGCAGGT

Function

symbol description
kdm1b Enables several functions, including FAD binding activity; histone demethylase activity (H3-K4 specific); and zinc ion binding activity. Involved in histone H3-K4 demethylation. Located in nucleoplasm. Part of nucleosome. Biomarker of retinoblastoma.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: lysine-specific histone demethylase 1B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682808.1 True 794 mRNA 0.47 4 31904235 31907805

Neighbor

gene id symbol gene type direction distance location
psmd6 psmd6,LOC107656032,LOC107696848 coding downstream 59244 31841108 ~ 31844991 (-)
thoc7 thoc7,LOC107739288 coding downstream 119215 31778357 ~ 31785020 (-)
LOC107197084 NA coding downstream 157065 31739871 ~ 31747170 (-)
fezf2 fezf2,fezf1,LOC108247338,LOC106530279 coding downstream 468748 31430891 ~ 31435487 (-)
LOC103035852 LOC108435806 coding downstream 533689 31305567 ~ 31370546 (-)
prickle2 prickle2,LOC107590162,LOC107728631,LOC107656034,LOC107739290,LOC107551119,LOC107696846 coding upstream 21921 31929726 ~ 32080712 (-)
adamts9 adamts9 coding upstream 191661 32099466 ~ 32196761 (-)
magi1 magi1 coding upstream 371997 32279802 ~ 32481485 (-)
G194105 NA non-coding downstream 2163 31901808 ~ 31902072 (-)
LOC111195341 NA non-coding downstream 4245 31894502 ~ 31899990 (-)
G194046 NA non-coding downstream 201983 31597364 ~ 31702252 (-)
G194055 LOC108435731,LOC108255025,LOC107696850,LOC107550476,LOC107739284 non-coding downstream 206465 31696272 ~ 31697770 (-)
G194040 NA non-coding downstream 332947 31546553 ~ 31571288 (-)
G194153 NA non-coding upstream 173210 32081015 ~ 32081371 (-)
G194142 NA non-coding upstream 173703 32081508 ~ 32083630 (-)
G194234 NA non-coding upstream 422521 32330326 ~ 32334659 (-)
G194244 NA non-coding upstream 574126 32481931 ~ 32482201 (-)
cadps cadps,LOC107549847 other downstream 250025 31450803 ~ 31654210 (-)
LOC103037496 mustn1,LOC103037496,LOC103359875,LOC107091502 other downstream 710186 31170298 ~ 31194049 (-)
trnae-cuc_20 NA other downstream 729357 31174807 ~ 31174878 (-)
spcs1 spcs1,LOC107680421,LOC107744856 other downstream 1073278 30809794 ~ 30830957 (-)
G193737 NA other downstream 1724109 30165761 ~ 30180126 (-)

Expression


Co-expression Network