LOC111195453


Basic Information

Item Value
gene id LOC111195453
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 8819156 ~ 8820096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651653.1
cgtccgaaatcgcgtacttccatactaaacagtatgcaaaagcagtatGCGAGATCGGGTAGTGTGTCCGAATGCGCAGTAGGCGAGTTTGAGTACGCGAAAAGTTCCCGGATGACGTACTGCACTGGgagacatttttaagtatacaaGCCCAGCACACTTCACCCGCTAatatttcccacaatccaccGGGAGCCGCGCTGAGCTGAGTGACCCGTCAGTGAGCGGCGGAGCGGCGGaggagaggagtggagagagagagaagtttatGAGattcaaCTATCCTTCCTACTCgagaggatgaagatgaagagagggagaaaaatgaacaacgaataaaaaaaataaataaagctactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651653.1 True 360 lncRNA 0.48 2 8819156 8820096

Neighbor

gene id symbol gene type direction distance location
LOC103024232 arhgef10la,LOC108438575,LOC107695083,LOC106565901 coding upstream 86031 8438713 ~ 8733125 (+)
LOC103046266 chd5,LOC107555845,LOC107691315 coding upstream 388094 8346072 ~ 8431062 (+)
LOC103047485 rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851 coding upstream 475809 8332182 ~ 8343347 (+)
LOC103024538 draxin,LOC108413332,LOC106565906 coding upstream 574159 8193011 ~ 8244997 (+)
pank4 pank4,LOC107742899 coding upstream 643986 8141553 ~ 8175170 (+)
klhdc7a LOC108438577 coding downstream 1016003 9836099 ~ 9839322 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding downstream 1203896 10023992 ~ 10041141 (+)
LOC103039471 NA coding downstream 1299937 10120033 ~ 10132709 (+)
LOC111195373 NA coding downstream 1357034 10177130 ~ 10180602 (+)
LOC111195374 NA coding downstream 1394263 10214359 ~ 10214948 (+)
G188178 NA non-coding upstream 48070 8770308 ~ 8771086 (+)
G188149 NA non-coding upstream 318121 8500164 ~ 8501035 (+)
G188063 rap1aa,LOC106582744,LOC107751450,LOC101070080 non-coding upstream 679651 8121744 ~ 8139505 (+)
G188062 NA non-coding upstream 698528 8120330 ~ 8120628 (+)
G188051 NA non-coding upstream 769044 8049638 ~ 8050112 (+)
G188185 NA non-coding downstream 29210 8849306 ~ 8849567 (+)
G188186 NA non-coding downstream 35410 8855506 ~ 8891767 (+)
G188188 NA non-coding downstream 62872 8882968 ~ 8943622 (+)
G188191 NA non-coding downstream 109727 8929823 ~ 8930309 (+)
G188206 NA non-coding downstream 200539 9020635 ~ 9020895 (+)
agtrap agtrap other upstream 547444 8256796 ~ 8271712 (+)
LOC111195452 NA other upstream 705914 8112003 ~ 8113242 (+)
trnaq-uug_4 NA other upstream 1626930 7192154 ~ 7192226 (+)
LOC103029365 NA other upstream 1720484 7077165 ~ 7098672 (+)
p3h1 NA other upstream 3020177 5779891 ~ 5798979 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 463699 9283795 ~ 9819955 (+)
G188325 NA other downstream 1034211 9854307 ~ 9856995 (+)
LOC111195371 NA other downstream 1281659 10101755 ~ 10106530 (+)
G188624 NA other downstream 1483264 10303360 ~ 10303665 (+)
G188771 NA other downstream 2027975 10848071 ~ 10852736 (+)

Expression


Co-expression Network