LOC111196695 (LOC108271652)


Basic Information

Item Value
gene id LOC111196695
gene name LOC108271652
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 195395 ~ 198841 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU320521
TACAGGGTCAGAAACAGTCACACAATCTTCCAGACAGGAGGATGGGAATTACGAAAATGATGTACATTGGCTTCGCCTCCAGACAAGAGGCAGGGCCAACCAATCAGAATTGGTCTGCCAGAGCctgaaccccaacaccaaccaatcagattcagtctaccagagcctaaaccccaacaccaaccaatcagattcagtctaccagagcctaaaccccaacaccaaccaatcagattcagtctaccagagcctcaaccccaacaccaaccaatcagattcagtctaccagagcctgaaccccaacaccaaccaatcagattcagtctaccagagcctaaatcccaacaccaaccaatcagattcagtctaccagagcctaaaccccaacaccaaccaatcagattcagtctaccagagcctaaatcccaacaccaaccaatcagattcagtctaccagagcctaaaccccaacaccaaccaatcagattcagtctaccagagcctaaatcccaacaccaaccaatcagattcagtctaccagagcctgaaccccaacaccaaccaatcagattcagtctaccagagcctaaaccccaacaccaaccaatcagattcagtctaccagagcctgaaccccaacaccaaccaatcagattcagtctaccagagcctgaa
>XR_002652211.1
GGACCAACCGATACATCAAACCCCTTAAGAAGTTTCACTCGACAGAGCTtgaaaacaactttaaaatacagtGAAGAACCCTCAGTGACTATGAACGTGCCAACAACAGCATTGGAGATTTCCCCACCACTAGTGTTTCCTGTTGTGATTCCTGTAGTATCTGTGGTTCTGGTGCTGTTTCTGAGTGGACTCTTATTCTTCATATTCGCTCTCAGAAAGAGAAGACAAACTTCAGGGTCAGAAACAGTCACACAATCTTCCAGACA

Function

NR:

description
PREDICTED: polymeric immunoglobulin receptor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320521 True 675 lncRNA 0.48 2 198066 198841
XR_002652211.1 False 266 lncRNA 0.43 3 195395 198101

Neighbor

gene id symbol gene type direction distance location
LOC103028511 NA coding upstream 17617 162608 ~ 177778 (+)
LOC111196686 NA coding upstream 33920 156046 ~ 161475 (+)
LOC111196685 NA coding upstream 65054 121000 ~ 130341 (+)
LOC111196693 NA coding upstream 81987 106202 ~ 113408 (+)
LOC111196684 NA coding upstream 92701 95707 ~ 102694 (+)
LOC103028199 NA coding downstream 1799 200640 ~ 208869 (+)
LOC103027884 NA coding downstream 13063 211904 ~ 216369 (+)
LOC111196692 NA coding downstream 18972 217813 ~ 224768 (+)
LOC111196688 NA coding downstream 28008 226849 ~ 229983 (+)
LOC111196689 NA coding downstream 43474 242315 ~ 261740 (+)
G235513 LOC108271652 non-coding upstream 27772 160915 ~ 167623 (+)
G235498 NA non-coding upstream 40742 143600 ~ 154653 (+)
G235508 NA non-coding upstream 50200 144347 ~ 145195 (+)
G235490 NA non-coding upstream 105991 76417 ~ 89404 (+)
G235526 NA non-coding downstream 32708 231549 ~ 232370 (+)
G235527 NA non-coding downstream 33627 232468 ~ 234112 (+)
G235593 NA non-coding downstream 46574 245415 ~ 245619 (+)
G235600 NA non-coding downstream 89720 288561 ~ 291723 (+)
LOC111196687 NA other upstream 432 192861 ~ 194963 (+)
LOC103028116 NA other upstream 172826 20689 ~ 22569 (+)

Expression


Co-expression Network