RNA id: XR_002652211.1


Basic Information

Item Value
RNA id XR_002652211.1
length 266
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC111196695
representative False

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 195395 ~ 198841 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGACCAACCGATACATCAAACCCCTTAAGAAGTTTCACTCGACAGAGCTtgaaaacaactttaaaatacagtGAAGAACCCTCAGTGACTATGAACGTGCCAACAACAGCATTGGAGATTTCCCCACCACTAGTGTTTCCTGTTGTGATTCCTGTAGTATCTGTGGTTCTGGTGCTGTTTCTGAGTGGACTCTTATTCTTCATATTCGCTCTCAGAAAGAGAAGACAAACTTCAGGGTCAGAAACAGTCACACAATCTTCCAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320511 lncRNA upstream 27772 160915 ~ 167623 (+) True G235513
TU320479 lncRNA upstream 40742 143600 ~ 154653 (+) True G235498
TU320500 lncRNA upstream 50200 144347 ~ 145195 (+) True G235508
TU320466 lncRNA upstream 105991 76417 ~ 89404 (+) True G235490
TU320529 lncRNA downstream 33448 231549 ~ 232370 (+) True G235526
TU320530 lncRNA downstream 34367 232468 ~ 234112 (+) True G235527
TU320617 lncRNA downstream 47314 245415 ~ 245619 (+) True G235593
TU320624 lncRNA downstream 90460 288561 ~ 291723 (+) True G235600
XM_022686049.1 mRNA upstream 432 192877 ~ 194963 (+) True LOC111196687
XM_022686048.1 mRNA upstream 17617 162608 ~ 177778 (+) True LOC103028511
XM_022686047.1 mRNA upstream 33920 156046 ~ 161475 (+) True LOC111196686
XM_022686046.1 mRNA upstream 65054 121000 ~ 130341 (+) True LOC111196685
XM_022686063.1 mRNA upstream 81987 106202 ~ 113408 (+) True LOC111196693
XM_022686050.1 mRNA downstream 2539 200640 ~ 208869 (+) True LOC103028199
XM_007239019.2 mRNA downstream 13803 211904 ~ 216369 (+) True LOC103027884
XM_022686061.1 mRNA downstream 19712 217813 ~ 224768 (+) True LOC111196692
XM_022686051.1 mRNA downstream 28748 226849 ~ 229983 (+) True LOC111196688
XM_022686053.1 mRNA downstream 44214 242315 ~ 261740 (+) True LOC111196689
TU320520 other upstream 2122 192861 ~ 193273 (+) False LOC111196687
TU320439 other upstream 173828 20689 ~ 21567 (+) False LOC103028116

Expression Profile