RNA id: XM_022686050.1


Basic Information

Item Value
RNA id XM_022686050.1
length 1058
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC103028199
representative True

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 200640 ~ 208869 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAAGATCCTCCTCATCTTCACCCTCTACCTGATCTCAGACATCGACTATAAGAAGAATATCAGTGTGAAAGGTCACGTAGGACAAACAGTGAACATCAGCTGCAATTACCCACAATCCCTCATCAGTAAACCCAAGTTCCTCTGTAGGAGAAGGAGCACTGCTGACTGTTATTATACAGCATCTGCTAAAGAGAGTAAAAGGTGGATTAAGGAGGGGAAATTCTCTCTGTATGACGACAGAGCAAAGAAGACTTTCACAGTGAGCATCAGCAGTGTGACTGAGGGAGATTCTGGTGAATACTGGTGTGGAGCTGAATCAGACTGGGAAAAAGATCTTGGATACAAGGTTTATTTCACACAGATCAACCTCAGAGTTACTGCAGAACCAGGACAACCAGATACATCAACCCCCTCAAGAAGTTTCACTCAACCGAGCAtgaaaacaactttaaaaaacagtgaacaGCCCCAACAACGTTTAGTGACGACAAACACGCCAACAACAGAATTTCCAACGTTCTTCGTGATCACTGTTGTGTCTGTGATTCTGGTTCTGCTTCTAATCGGACTTTTAGTCTTCGTCGTCATTCTCCAAAAGAGGGTCAAAGCTCGAGCCTCAACATCAATCCAGTCCACCAGAGGATCCTCAAACACTAACACGGTCTATGAGGAGATAAAAGACACCAAACGCCATCCTTCACCAGATTCTGGAGCTTCCACAGTCCACCAGCTACCCACAAACCCCTCAGACCCTTCTCACACTCTCTACGATAATGTCCAAATCCGTCAATGTCCAAATCCCATCTACTCTACAGCTCCAGATCAGAACATCAACTCAACACCTCAAATACCCACAAGCTCCTCTGGTTCCTCAGCCAGTACTACTGAAGATCCAGCTTACGCCACGGTGAAGTTCACCAAGAATTATAATGTTACAGCAAAAGTCAACATGAAGGAGGAGTCATGTGACTACGCTACTGTCAAACATGCTAGCGGAAGTGGCTAggttattataatatatgtaatattataatttgtttTGACATAGTTTcataa

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko05310 Asthma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320521 lncRNA upstream 1799 198066 ~ 198841 (+) True LOC111196695
XR_002652211.1 lncRNA upstream 2539 195395 ~ 198101 (+) False LOC111196695
TU320511 lncRNA upstream 33017 160915 ~ 167623 (+) True G235513
TU320479 lncRNA upstream 45987 143600 ~ 154653 (+) True G235498
TU320500 lncRNA upstream 55445 144347 ~ 145195 (+) True G235508
TU320529 lncRNA downstream 22680 231549 ~ 232370 (+) True G235526
TU320530 lncRNA downstream 23599 232468 ~ 234112 (+) True G235527
TU320617 lncRNA downstream 36546 245415 ~ 245619 (+) True G235593
TU320624 lncRNA downstream 79692 288561 ~ 291723 (+) True G235600
XM_022686049.1 mRNA upstream 5677 192877 ~ 194963 (+) True LOC111196687
XM_022686048.1 mRNA upstream 22862 162608 ~ 177778 (+) True LOC103028511
XM_022686047.1 mRNA upstream 39165 156046 ~ 161475 (+) True LOC111196686
XM_022686046.1 mRNA upstream 70299 121000 ~ 130341 (+) True LOC111196685
XM_022686063.1 mRNA upstream 87232 106202 ~ 113408 (+) True LOC111196693
XM_007239019.2 mRNA downstream 3035 211904 ~ 216369 (+) True LOC103027884
XM_022686061.1 mRNA downstream 8944 217813 ~ 224768 (+) True LOC111196692
XM_022686051.1 mRNA downstream 17980 226849 ~ 229983 (+) True LOC111196688
XM_022686053.1 mRNA downstream 33446 242315 ~ 261740 (+) True LOC111196689
XM_007239012.3 mRNA downstream 62830 271699 ~ 275746 (+) True LOC103025438
TU320520 other upstream 7367 192861 ~ 193273 (+) False LOC111196687
TU320439 other upstream 179073 20689 ~ 21567 (+) False LOC103028116

Expression Profile