RNA id: XM_022686061.1


Basic Information

Item Value
RNA id XM_022686061.1
length 1645
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC111196692
representative True

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 217813 ~ 224768 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGTTTTAGAGCTTCTGATATCAGTCTGAACTGGACTAAAGCTGAATTGATCCTATAAAACTGAACTCAGGATGAAGATAATCCTCATCTTCACCTTCTACCTGATCTCAGCAGGGGGTGGAGCATCCAGTGAAGTGAGGGGATATTCAGGAGGAGGAGTTCTCATCAAGTGTAAATATGATAAGGAATACACATCAAACAACAAGTACTTCTGTAAGGGTTCAGTGCCAAACTGTGACGACCAGATCAAGACGGAAGTTAAGAATAAATgggtaaatacaggaagattCTCACTGATTGATAACACCAGCTCTGCAGAGTTCTGGGTGATGATCAGAGAGCTCACTGTACAGGATTCTGGAACGTACCAGTGTGCGGTTGATATATATTTGCTCAAAGACATCTACACACCAGTGATACTGAAGATGGAAGAGGATCCCAACTATAAGAAGAGCATCAGTGTGAATGGTCATCTAGGCAGAGAAGTGAACATCAGCTGCAATTACCCACAATCCCTCAGCAGTAAACACAAGTTCCTCTGTAGGAGAGAGGGCATTGTTGACTGTAACAACAACCATCCATTAAAAGAGCGTAGAGGATTGATAAAACATGATGACAGAACGCACAACTTCACAGTGAGCATCAGCAATGTAACTGAGGGAGATTCTGGTGAATACTGGTGTGGAGCTGAATCAGACTGGGAAAAAGATCATGgatacaagatttattttacaaGAATCAATCTGACAGTAGCAACAGATCTAAGAGAACCAACAAGAACATCACcctcttcttcatcttcatcaatGTCAAACACAACTGTAGATCACTCAAAGGAACACAAATTTAAATCCACTGGAGCATCCACATTAGAGACAAAagCATTTCCAGCTTCCTCTGTGGTCACTGCTGTTTCTGTGATTCTGGTTGTGCTTCTGATTGGACTCTTATTCATCACAGTTTTACTCCTAAAAAAACATCGGAAGAATCAAGCTCCAGTGTACGCCACTGTGGATTTCAGCAAGACTGAAGATGTTACCTCACTAACCATCAACAAGAAGGAGGAGTCATGTGACTACGCTACTATAAAACAATAGTAGATATAAAGATCTAGTCAAGATGTAGCATGTATTACTTTTTTCTCCAATTTGTATTAATTTCCACCAAAAAAACAGACCATAGTGTGGATTTTTAACACAGAAAGACTTTTATTctggtattttattttgtgttttaaggaATAGGATAAATAACTTGAATGGAGATTAGATTTATAGTGATTTCtggtttatagtttatatgtttatagacACTGCTGTTATTCACTGAGTGccataaaataattttcagtacagaatcagtacggCCGgcttttaatgcagtgccaTCTTAGGGCCAATAGAATGTGATACTTTGGAGCCAATACACaagaataaacaataataatctatTGGCTACATGCCTAGTGTCAAGTGTGGGctatagaggggtataaaccccCTAGAATTGAGGTGTTTAGCACCAATACTTTAGTATGGGTGAGGTGGATTGGAGATCATTATCATCCAACAtcttgacctcactaatgctcgtCACTGAaggcaatcaaatcctcacagcaatgcatcaaaatctagtagaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320506 lncRNA upstream 15195 176938 ~ 202618 (+) True G235510
TU320521 lncRNA upstream 18972 198066 ~ 198841 (+) True LOC111196695
XR_002652211.1 lncRNA upstream 19712 195395 ~ 198101 (+) False LOC111196695
TU320511 lncRNA upstream 50190 160915 ~ 167623 (+) True G235513
TU320479 lncRNA upstream 63160 143600 ~ 154653 (+) True G235498
TU320529 lncRNA downstream 6781 231549 ~ 232370 (+) True G235526
TU320530 lncRNA downstream 7700 232468 ~ 234112 (+) True G235527
TU320617 lncRNA downstream 20647 245415 ~ 245619 (+) True G235593
TU320624 lncRNA downstream 63793 288561 ~ 291723 (+) True G235600
XM_007239019.2 mRNA upstream 1444 211904 ~ 216369 (+) True LOC103027884
XM_022686050.1 mRNA upstream 8944 200640 ~ 208869 (+) True LOC103028199
XM_022686049.1 mRNA upstream 22850 192877 ~ 194963 (+) True LOC111196687
XM_022686048.1 mRNA upstream 40035 162608 ~ 177778 (+) True LOC103028511
XM_022686047.1 mRNA upstream 56338 156046 ~ 161475 (+) True LOC111196686
XM_022686051.1 mRNA downstream 2081 226849 ~ 229983 (+) True LOC111196688
XM_022686053.1 mRNA downstream 17547 242315 ~ 261740 (+) True LOC111196689
XM_007239012.3 mRNA downstream 46931 271699 ~ 275746 (+) True LOC103025438
XM_022686054.1 mRNA downstream 60302 285070 ~ 293691 (+) True LOC111196690
TU320520 other upstream 24540 192861 ~ 193273 (+) False LOC111196687
TU320439 other upstream 196246 20689 ~ 21567 (+) False LOC103028116

Expression Profile