RNA id: TU320479


Basic Information

Item Value
RNA id TU320479
length 1604
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G235498
representative True

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 143600 ~ 154653 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGTACTGTTTATTACTGACAGATCTATACTATGAGAGGAGCATCAGTGTGAAAGGTCACGTAGGACAAACAGTGAACATCAGCTGCAATTACCCACAATCCCTCAGCACTAAACCCAAGTTCCTCTGTAGGAGAGAGAGCACTGCTGACTGTTATTATACAGCATCTGTTAAAGAGAGTAAAAAGATGGATAAAGGAGGGAAGATTCTCTCTGTATGACGACAGAGCAAAGAAGACTTTCACAGTGAGCATCAGCAGAGTGACTGAGGGAGATTCTGGTGAATACTGGTGTGGAGCTGAATCAGACTGGGAAAAAGATCGTGgatacaagatttatttcacaCAGATCAACCTCAGAGTTACTGAACCAACAGTAAAACCATCAGCCTCACCATCAACAAGCTCAAAGCCAGGGATCACAGAAGCCACCACTTCCTCAACATCTACACCTACAGTAACTTCTGCATATAACACATCACCAGCTACATCCCCAGACCAGACATTCAGTGACTCTTCTAACAACCACCGGGTTTCCCATACAGTCTACGACTACGAAGAGATTAAAGCCACGGGACGCCATCCTACACCAGATACTGGAGCTTCAACAGTCTACTCTACTGCCCAGCTACCCACAAACCCCTCAGATCCTTCTGACACTCTCTACCATAATGTTCAATTACGCACCGGCCTGGGAGATTTTTCAAATCCTATTTATTCTACGGCTCAGGACCCTCAACTTCCCACAAGCCCCTCTGATTCCTCAGTAAGTGACCTTCAGCGTAAATCTGTACAACCCGCTGAAGATCCAGCTTACGCCACGGTGAAATTCACCAAAAATGATGCTGTTACCATAGCAACCGTCAACAAGGAAGAGGAAGACTCATGTGACTACACCACTGTCAAGTAACATGATAGCGGAAGTGCTAGTTTAGCATGTAGCATTTATATGGTAATCCAATTCCATcaaaatttaatttttcttttttttttttagttatggaAGAGTGTAATATTGGTGATGTAGTTAAAAAATGTACTGTCCATACAATTTAGTTGATGAGCACCTTATATCtccatttcttgttttttttttttttgttttttaatattcacCTACTGTAAACTCGGcaggtgtttttcacattaTATCAATATGTCATGTttaatagaccaatagaaatgccctAAAAATACTTGTCCAATTACTTGTATGTGTCCAACAAACGCTATGTTATTTTACACTCTGTGCACCTGTGTAGCCAAGacagcgatgaacgtctgactgttggcgtctgtctaggttgtattcagtctgtggagctcctgtgttttctgttaccaagataaacaagcaaaactccagaaatgtacctgaacacacctcatttccagaacaccacgcctataaatgtgctttttttttcttatgtacaactttaaataaaacatttgtctTAATAACTATGTGACATGTAAAAGCTTACCAAAACAAatttatttgttacattttttccacttatcttttaaatgtaatacattatatatgtgTGATGCTATTTGAAGAAaaggtaataaataaaataaaattatgaaaatacatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320466 lncRNA upstream 54196 76417 ~ 89404 (+) True G235490
TU320511 lncRNA downstream 6262 160915 ~ 167623 (+) True G235513
TU320506 lncRNA downstream 22285 176938 ~ 202618 (+) True G235510
XR_002652211.1 lncRNA downstream 40742 195395 ~ 198101 (+) False LOC111196695
TU320521 lncRNA downstream 43413 198066 ~ 198841 (+) True LOC111196695
TU320529 lncRNA downstream 76896 231549 ~ 232370 (+) True G235526
XM_022686046.1 mRNA upstream 13259 121000 ~ 130341 (+) True LOC111196685
XM_022686063.1 mRNA upstream 30192 106202 ~ 113408 (+) True LOC111196693
XM_022686045.1 mRNA upstream 40906 95707 ~ 102694 (+) True LOC111196684
XM_022686060.1 mRNA upstream 48900 89563 ~ 94700 (+) True LOC111196691
XM_022686062.1 mRNA upstream 58789 76891 ~ 84811 (+) True LOC103027463
XM_022686047.1 mRNA downstream 1393 156046 ~ 161475 (+) True LOC111196686
XM_022686048.1 mRNA downstream 7955 162608 ~ 177778 (+) True LOC103028511
XM_022686049.1 mRNA downstream 38224 192877 ~ 194963 (+) True LOC111196687
XM_022686050.1 mRNA downstream 45987 200640 ~ 208869 (+) True LOC103028199
XM_007239019.2 mRNA downstream 57251 211904 ~ 216369 (+) True LOC103027884
TU320439 other upstream 122033 20689 ~ 21567 (+) False LOC103028116
TU320520 other downstream 38208 192861 ~ 193273 (+) False LOC111196687

Expression Profile