RNA id: XM_022686047.1


Basic Information

Item Value
RNA id XM_022686047.1
length 1326
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC111196686
representative True

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 156046 ~ 161475 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCTGTAAAACTGAACTCAGGATGAAGATCCTCCTCATCTTCACCCTCTACCTGATCTCAGGGGGTGAAGCCTCCAGTGAAGTGAGGGGATATTCAGGAGGAGGAGTTCTCATCAAGTGTAAATATGATAGAGAATACACATCAAACAAAAAGTACTTCTGTAAGGACTCACGGCCGAACTGTGATGACCTGATCAAGACAGATGCTAAAGATAAATGGGTCAATATAGGAAGATTCTCACTGATTGATAAACCCAGCTCTGCAGAGTTCTGGGTGATGATCAGAGAACTCACTGTAGAAGATTCTGGGATGTACCAGTGCGGAGTTGATAGAGAAAATCGGCTAGACAAAAGCACAAAAGTGGAACTGAAGATACATGAAggtaacacaataaaaataatgaattatgttatttttagcAGTGGTAGGGTTATTGTTTGCTATCTAGGCTATAAGAGGAGCATCAGTGTGAAAGGTCATGTAGGACAAACAGTGAAAATCACCTGCAATTACCCACAATCCCTCATCAGTAAACCCAAGTTCCTCTGTATGAGATGGAGCACTGCTGACTGTTATTATACAGCATCTGTTAAAGAGAGTAAAAGACGGATAAAGGAGGGAAGAGTCTCTCTGTATGACGACAGAGCAAAGAAGATCTTCACAGTGAGCATCAGCAGTGTGACTGAGGGAGATTCTGGTGAATACTGGTGTGGAGCTGAATCAGACTGGGAATCTGATCACGgatacaagatttatttcacaCAGGTTAACCTCGCAGTTACTGAACCAGAAGGACAAGATATGACTCCACACTCTCCACCATTAAGCTCTACTCCACAGAACACAGAGGAAACCACAACATCCTCAACTGAGTCAAATGAACAAACAGCACTAGTGTTTCGTGTTGTGATTCCTGTAGTATCTGTGGTTCTGGTGCTGTTTCTGAGTGCACTCTTATTCTTCATATTCGCTCTCAGAAAGAGAAGACAAACTTCAGGATCAGAAAGAGTCACACAATCTTCCAAAAATGACGATTATGAAAATGATGCAGACTTGTTTCGTCTTCAGACAAGAAGTTGTggcaaccaatcagattcagtttacCAGAGCctcaaccccaacaccaacaatcagattcagtctaattcagtttacCAGAGCCTGaatcccaacaccaaccaatcagattcagtttacCAGAGCCTGaatcccaacaccaaccaatcagattccgTCTACCAGAGCCTGAATCCCAACAACTACCAATCATATTTAGTCTACCAGAGCctcaaccccaacaccaaccaatcagattctgtCTTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320479 lncRNA upstream 1393 143600 ~ 154653 (+) True G235498
TU320500 lncRNA upstream 10851 144347 ~ 145195 (+) True G235508
TU320466 lncRNA upstream 66642 76417 ~ 89404 (+) True G235490
TU320506 lncRNA downstream 15463 176938 ~ 202618 (+) True G235510
XR_002652211.1 lncRNA downstream 33920 195395 ~ 198101 (+) False LOC111196695
TU320521 lncRNA downstream 36591 198066 ~ 198841 (+) True LOC111196695
TU320529 lncRNA downstream 70074 231549 ~ 232370 (+) True G235526
TU320530 lncRNA downstream 70993 232468 ~ 234112 (+) True G235527
XM_022686046.1 mRNA upstream 25705 121000 ~ 130341 (+) True LOC111196685
XM_022686063.1 mRNA upstream 42638 106202 ~ 113408 (+) True LOC111196693
XM_022686045.1 mRNA upstream 53352 95707 ~ 102694 (+) True LOC111196684
XM_022686060.1 mRNA upstream 61346 89563 ~ 94700 (+) True LOC111196691
XM_022686062.1 mRNA upstream 71235 76891 ~ 84811 (+) True LOC103027463
XM_022686048.1 mRNA downstream 1133 162608 ~ 177778 (+) True LOC103028511
XM_022686049.1 mRNA downstream 31402 192877 ~ 194963 (+) True LOC111196687
XM_022686050.1 mRNA downstream 39165 200640 ~ 208869 (+) True LOC103028199
XM_007239019.2 mRNA downstream 50429 211904 ~ 216369 (+) True LOC103027884
XM_022686061.1 mRNA downstream 56338 217813 ~ 224768 (+) True LOC111196692
TU320439 other upstream 134479 20689 ~ 21567 (+) False LOC103028116
TU320520 other downstream 31386 192861 ~ 193273 (+) False LOC111196687

Expression Profile