CI01000013_00505245_00505730 (NMBA)


Basic Information

Item Value
gene id CI01000013_00505245_00505730
gene name NMBA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 505106 ~ 505789 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_00505245_00505730.mRNA
AGAGCGCTCGCGACCAGGTGAATCTGAACGGAGGAATCCACCTACAGCTACTTGAGAAGATGTCTTTGAGAACTGAAGATGGACATTGCAAATATAGACTATTATTTGCGTTCATTATGCTTTTTAACATATCCTTAAGCACCTCTGTGAGTCTCGATTTAACGGAGCTGCGAAATAAAGTTTCGAAAATAAAAGTGCATCCACGTGGGAATCTCTGGGCGACAGGTCATTTCATGGGCAAGAAGAGTATTTCAAACAGCCAGCTGCAGGACTCTCCGTTCTCCTCAAAGCTTTACAGGGATACTATGGGAGAATCCGAGGATTTGAGGGAGCTGGTCACTCAGGAGCTGCTCAAAGTTGCCCTTCAGGCTCAACTTGAACATCCAAAAGGGACTCGAGATATTTATAAACAGGTGATAAGAGCTATTTACAGAATTGGTCAGCAAAATGTACAGAATTAACTGCTTTGTGAATAGCCTAGGCTATATATTTTATTTATTCATTTTTCAGGATACAGACTTCATGGTAAAGCTTTTGAAAAGCTATACATTGGGGAAAAATAACCTATAGTGACAATGCCATGGATGTAATTGTAATAAA

Function

symbol description
nmba Predicted to enable neuromedin B receptor binding activity and neuropeptide hormone activity. Predicted to be involved in positive regulation of hormone secretion. Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Human ortholog(s) of this gene implicated in obesity. Orthologous to human NMB (neuromedin B).

NR:

description
neuromedin B, partial

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process

KEGG:

id description
K05223 NMB; neuromedin B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_00505245_00505730.mRNA True 600 mRNA 0.40 2 505106 505789

Neighbor

gene id symbol gene type direction distance location
CI01000013_00471569_00472390 CH25HL1.2 coding downstream 32607 471134 ~ 472499 (-)
CI01000013_00464450_00466620 TSPAN3, TSPAN3A coding downstream 38486 464349 ~ 466620 (-)
CI01000013_00424532_00429576 CLASRP coding downstream 74623 424532 ~ 430483 (-)
CI01000013_00402796_00415369 ZNF296 coding downstream 89737 402699 ~ 415369 (-)
CI01000013_00372377_00391434 CAPN12 coding downstream 113191 371535 ~ 391915 (-)
CI01000013_00508109_00511120 SEC11A, SC11A, SEC11C, BRAFLDRAFT_76762, SEC11C.L, SEC11A.L, MGC82823 coding upstream 2079 507868 ~ 511274 (-)
CI01000013_00513362_00521860 ZNF592 coding upstream 6412 512048 ~ 521860 (-)
CI01000013_00537410_00556704 ALPK3, ALPK3A coding upstream 31588 537118 ~ 557300 (-)
CI01000013_00583295_00609148 NA coding upstream 77445 583234 ~ 610136 (-)
CI01000013_00698283_00710200 BLM coding upstream 192494 698283 ~ 711051 (-)
G78435 NA non-coding downstream 1601 501822 ~ 503505 (-)
G78439 NA non-coding downstream 8308 496024 ~ 496798 (-)
G78397 NA non-coding downstream 18204 486610 ~ 486902 (-)
G78381 NA non-coding downstream 47239 457320 ~ 457867 (-)
G78380 NA non-coding downstream 47992 456883 ~ 457114 (-)
G78450 NA non-coding upstream 20178 525967 ~ 526213 (-)
G78451 NA non-coding upstream 20640 526429 ~ 528958 (-)
G78452 NA non-coding upstream 23304 529093 ~ 529584 (-)
G78296 NA other downstream 478209 26528 ~ 26897 (-)
G79690 NA other upstream 2307458 2813247 ~ 2815392 (-)
G80262 NA other upstream 3059382 3565171 ~ 3567537 (-)
G80271 NA other upstream 3213644 3719433 ~ 3723607 (-)
G80399 NA other upstream 3398278 3904067 ~ 3906240 (-)
G80443 NA other upstream 3559153 4064942 ~ 4066017 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013460 nmba coding NC_007129.7 CM002902.2 26784968 ~ 26785861 (-)