CI01000013_00698283_00710200 (BLM)


Basic Information

Item Value
gene id CI01000013_00698283_00710200
gene name BLM
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 698283 ~ 711051 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_00698283_00710200.mRNA
AAGATTTTGTAATGTCATGTTTGCAACAAAATTATTGTACTGAAATAAATATTTTCTCAGGGATTTGTTTTTGTGGATTACTTTCCATCAGCATAATTGTGTTCATCCATTTACTAAAGCTTAAAAATTGATTAAAACTGAAAAAAGCAAGACACTGCAACCGTGTTGTATTTAAAATTTAGTGTATTAAAAGTTTTCTATTAATTAAATGTTGTAAGACTGTACACAACATCATATCACCAATGGAATGTGAAAATGATGTGCAATTCCACATCAAGCCAATAAGTGGCGACCTAAATCCACATCTAATGTTTAAGCTGCCACAACGTGCACCAGAGAGGAAGCAGTTGTTTATACGTTAAGACAAGATTAAAACTCCACTGAACAAAGACATGTAAGGAGAAAAGGAAAAAAGAGAAAATGTTGCTGGTGTAATAATAGCATAATAGCATTATGCTAGATATAGCGAACATGCCGCCGCTTAGCGGAAGTGATGTTACTGGTAGCTGTCCAATCAGAGCGAGCTGTGAATACGCGGTAAGCGCGAGCTTTCAGCGGTGTGTTATGGTGACGTTGTGTGTTGTGCATATATTGTTTTGTTTGTACCAGAATATCAAACGTTCATTTTCGGTGGCGGTAATTGTAAAGGAGTTTTGTGATTTTGAAGTCCTTACGATGGCGGAAATAGAGCAAAACGTCGCGCTGTGAGTGTTTTTGTGCTAAACAATCGAGGGTTGTAATGTCGCATTAATTCTAACGGAGCATTCCTGTGTTTATTTACGTGTGTTTGTTTGTGGAGTTGATTAAATGCCATATACTGAGGAGTATAATTTCATATAAATATACACACAATGCCGAGTCTTCCTCAAAACAACCTAAAGGAGCAACTGGACCGACACAATAATGCTGCACAGAACAAGCTGTCACTGCTCAAACCAAAGCCTGGGGGCTTTTGCTTCAAAAAGAAGTCTTCATCAGGCATCTCCAAAGTGGAAGTTCCTCAAAAGGTAACTGGTGCAAATGTCTTAGCCAACAGGAGTGTCAATGTTCTCCGCAGCTGTGAAGTAACCAAAACTCCTGTGACATTTTCGCAAAAGCCTGAAAGAGTAGCACCGAAAGTCAACTTCTTCACAGCACCAAGCAAGCCGAAGGCAATTACTGTTAATCCATTGGCCAACCCATTTGCTGTGAACAAAACGCCTCTTGTCCAATCCACCATTAAGGCTTTGTCAAAATCTGCAGCCTTGCCTATGGATTCTACTGATGATCAAACTGTGGGTGAACCTAAGCGTGACATCTCTCAACTTTCCTTCAACGAATGGGATGATTTGGATGATTTTGAAACCCCAGTCAAGGGAAGAGTAGTATCCCCAGTTGCAGGGACCTCTACAAAAAAGCCAAGTGTATCGGACCAGAACACATCTCCAAATTCCTCTTGTGCTAAGAGTGATGAGACTACATTAAATGGAGGTTCACAGGCTACAGAGACCATAACTGTCCCAAAGGACGTCCTGTCAGCTGCAAGTGGAGTCGGCACAGAGCCAGAGGACTCGCCCATTAAAAAAATCAAAAGACGTAAATCAGTCCAGCAAAAGGCATTATTGAGTGACACTGAGGATGAGGAGATCATCGACTGTATTTCACCAGTTAAAAACCAGGAGGATTTCAAGTGTGCGACAACTACAGAAGAAAACAACTGGTCTGAGACAAACATCATAGATGTTGATGACTGTGAGACAGACAACTTTTATGAAGATTATGAGGATTTCATCCCACCGTCCCCTGTTCCTGAGGAGACGAGTCCCTTTGTCTCAGATAAGGAGAAAAGTTCATCTGACTCTGTTACCCATCCTGACAAAAATGTACCACCTCATGAATCTGCTTCAAGTATGTCAGCACGCTTGGATAAACCTGCCAAAGACTTAAAAGGAACTGATGATGCCCTCTTTAGGGTTATGGAGTCTATTTGTCATCTAGTGGACAATATTCCAGAGCATGAGCTCATAGCGCTTACCTGCGGTACAGAACTGTTACTGCAAAGAGCACACAGGAAAAGGATTATTGCTAATAGTGCACCATCTCAGTTATCACGATCAGCAACTCCATGTTCTAGTCTGCTTAACAGAAAAGGTTTTGCAGTCACACCCTCTAGTCTGTCATCATCGATGACCCCAATGACATCAGAAAAGGGAGGGAGCGTCAAAACGGACTTTATGAGTCGTGAGTCCAGTTCCTCCATCATGTTTCTGGGTAATGACTCTGTATTTGAGGACTCCGACTGCATCATCAATGGTGTTGAAACCCCTGGTGGTTCCTGGAATCCTAACTACTCCTCAAAAACATCAACTACTAGGGACATCTTAAACAGGTCAAGTCCAGCTGTAAGCAAATCTGAGGCAGATAAGTGCTACTCAAGGTTGTCCTTCAATGAGACAAACAATCAGATTGTGGATGTTGATCAGATTGACCTGTTTTATTCCCCCAAGAGAGTGGATTCAAGCAAGAGAAATGCAGAGAGCAGTGTTGAAACCAGCACTGCAGTACCCAACAGTTCTCGAGCAGACACAGAGCCAGTTGATGACTTTGATATTGATGACTTTGATATTGACGATTTTGATGAGACTGACATTCCAGATTATTATGAAGAACCTTCAAGTGTCTTGGCATCAAGAGACAGCTCTGGTGCAAATACTCCATCAGTGCGGGAGGGAGGGCCTTCAAAACCGCTGGAGAGAAAGACAGTTACACCAACAGCACCAAAACCTCCCAAAACACCCAACCCTGAACCTGTGTATAGAAACCCAGCTCATGACCGCTTTAGAGGCTTCAGCTTTCCTCATAGCCCAGAGATGATGAAGATCTTCCATAAGAAGTTTGGGCTGCATCAGTTCCGCTTCAATCAGCTGGAGGCTATTAATGCCACACTGTTAGGAGAAGACACGTTTGTTCTGATGCCTACAGGTGGTGGTAAAAGTCTCTGCTATCAGCTTCCTGCTTGTGTCTCCGCTGGGGTGACAGTAGTCATATCTCCTCTACGGTCTCTCATAGTTGACCAGGTCCAAAAACTCACCACATTAGATATTTGTGCAACTAGTTTATCAGGGGACAAAAAAGACAGTGAGGCTGCGCGGATCTATATGCAGTTGTCTAGGAAGGATCCCACCATCAAACTGCTTTATGCCACTCCTGAGAAGGTATGTGCAAGCGGACGAATGATCAGTGCCCTTCAGAATCTGTTTGAAAGAGGTTTGCTGGCTCGCATCGTCATTGATGAGGCCCATTGCGTCAGTCAGTGGGGTCATGACTTCAGGCCAGACTACAAGCGCTTACATGAGCTCCGGCAGATGTTTCCCAAGGTTCCTATAATGGCACTGACAGCCACAGCCACTCCTAGAGTTCAGAAAGACATTCTTAACCAGCTGTCAATGACCCGTCCTCAGGTATTCACTATGAGCTTCAACAGGCACAATCTCAAATACTCAGTTTTGCCAAAAAAGCCCAAGAAGGTTGATGAGGAATGCATTCAGTGGATCAAGAAATATTACCCACGTGACTCGGGGATCGTGTATTGTTTGTCTCGTAATGACTGCGACAATCTGGCTGACAGTCTTCAGAGGGCTGGGATTGCAGCGCTGGCTTATCACGCTGGCCTGAGTGACAGTGACAGGGAATATGTCCAGAACAAATGGATCAACCAGGATGGCTGCCAGGTTATGTGTGCCACCATTGCATTTGGCATGGGTATCGATAAGCCTGATGTGCGTTATGTGATCCATGCCAGTCTGCCCAAGTCAGTGGAGGGTTACTACCAGGAGTCAGGCAGAGCTGGTCGAGATGGAGAGATTTCCCACTGCGTCCTCTTCTATTCTTACAGCGATGTTATCCGCATCAAGAGACTCATTGCTATTAATATAATTGCAGTGGATAAAGATGGCAACCAGCAATCCAAAGCCACCCACATCAACAACCTGCACAGCATGGTGCATTTCTGTGAGAATTTGGCCGAGTGCAGGAGAATCCAGTTGCTGGCTTACTTTGGCGAGCACACGTTTAATACAAGCTTCTGTAAAGAGCATCCTGAGGTCATCTGTGACAATTGTGCCAGACCACACAAATATAAATCAAGAAATGTCACCGATGATGTGAAGAAGATTGCGAGGTTTGTGCAGGAGAACTGTGAGAAGGTTGGAAGCAGATATGGCAAATCCGCCCAGCTGAACCGGCTTACCCTCAACATGCTGGTTGACATATTTCTGGGCTCCAAAAGTGCTCGGATCCAGTCCGGAATGTTCGGGGTTGGAGCAGCATATTCCAAACACAATGCTGAGAGGCTCTTTAAGAAACTGGTGTTGGATAGTGTTCTGGTGGAGGACCTGTACATCACTAATAACGGGCAGGCAGTGGCCTATATCTCTGCAGGGCCTAAAGCTATGAGTGTACTGAATGGCTGCATGCAGGTTGAATTTATTGAGACTGAGAGTGCATCCAGCATCAGAAAGCACAAAGCATCTGTGACTGAGAACGTCTCTAAGAGAGAGGAGATGGTTAAAAAGTGTCTGCAGGAGCTCAATGATCTGTGCAAGAAGTTGGGCAAAGTTTTCGGCATTCATTACTACAACATTTTCTCCACAGCCACACTCAAAAAGATTGCTGAGACCCTCTCGCCTGATCCGGATGTGCTGTTGCAGATTGACGGTGTGACCGAAGACAAACTGGAGAAGTATGGAGCTGAGTTTATTGAACTGCTGCAGAAGTACTCGGAGTGGCAGCTGCCTGCTGAGGCACAGGCCGAGAGTTCAGGATGGATTGACACGACAAGAGGCCATCAAAATGAAGATGACGATTATGATGAAGGTGACATCACATCAACCTATTTCAGAAACACCTCTGGACGAGGAGCGAAGAGAAAGCAAGGGTCTTACTCCAGGAAACCCAAAAGAAGGAAAGGTTCCAGCGGCCAGAACTCCTCTAAAGGTGGATACAGCAATAACTGGTCTTCATCAAGAGGAGGAGGAGGATACAGGG

Function

symbol description
blm Predicted to enable 3'-5' DNA helicase activity and four-way junction helicase activity. Acts upstream of or within negative regulation of mitotic recombination. Predicted to be active in chromosome; cytoplasm; and nucleus. Is expressed in several structures, including otic vesicle; pericardial region; presumptive neural retina; retina; and ventricular system. Human ortholog(s) of this gene implicated in Bloom syndrome. Orthologous to human BLM (BLM RecQ like helicase).

GO:

id name namespace
GO:0006310 DNA recombination biological_process

KEGG:

id description
K10901 BLM, RECQL3, SGS1; bloom syndrome protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_00698283_00710200.mRNA True 5025 mRNA 0.45 21 698283 711051

Neighbor

gene id symbol gene type direction distance location
CI01000013_00583295_00609148 NA coding downstream 88147 583234 ~ 610136 (-)
CI01000013_00537410_00556704 ALPK3, ALPK3A coding downstream 140983 537118 ~ 557300 (-)
CI01000013_00513362_00521860 ZNF592 coding downstream 176423 512048 ~ 521860 (-)
CI01000013_00508109_00511120 SEC11A, SC11A, SEC11C, BRAFLDRAFT_76762, SEC11C.L, SEC11A.L, MGC82823 coding downstream 187009 507868 ~ 511274 (-)
CI01000013_00505245_00505730 NMBA coding downstream 192494 505106 ~ 505789 (-)
CI01000013_00711849_00714655 CTSH coding upstream 445 711496 ~ 715089 (-)
CI01000013_00717175_00764059 RASGRF1 coding upstream 6124 717175 ~ 764059 (-)
CI01000013_00857066_00859084 NA coding upstream 145660 856711 ~ 859204 (-)
CI01000013_00873450_00880028 ZNF710A, ZNF710 coding upstream 162177 873228 ~ 880042 (-)
CI01000013_00971329_00971942 NA coding upstream 259462 970513 ~ 972335 (-)
G78493 NA non-coding downstream 18339 670630 ~ 679944 (-)
G78494 NA non-coding downstream 26376 671666 ~ 671907 (-)
G78469 NA non-coding downstream 91784 605915 ~ 606499 (-)
G78452 NA non-coding downstream 168699 529093 ~ 529584 (-)
G78510 NA non-coding upstream 56896 767947 ~ 768352 (-)
G78511 NA non-coding upstream 57617 768668 ~ 768895 (-)
G78513 NA non-coding upstream 58736 769787 ~ 770120 (-)
G78522 NA non-coding upstream 71606 782657 ~ 782912 (-)
G78523 NA non-coding upstream 72083 783134 ~ 783417 (-)
G78296 NA other downstream 671386 26528 ~ 26897 (-)
G79690 NA other upstream 2102196 2813247 ~ 2815392 (-)
G80262 NA other upstream 2854120 3565171 ~ 3567537 (-)
G80271 NA other upstream 3008382 3719433 ~ 3723607 (-)
G80399 NA other upstream 3193016 3904067 ~ 3906240 (-)
G80443 NA other upstream 3353891 4064942 ~ 4066017 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00007764 blm coding CM030123.1 CM030123.1 29032754 ~ 29055451 (+)