CI01000013_04542059_04550082 (LCTLB, LCTL)


Basic Information

Item Value
gene id CI01000013_04542059_04550082
gene name LCTLB, LCTL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4542059 ~ 4550307 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_04542059_04550082.mRNA
GAGAGTGTGGTGCTGATGAGTGCTGGAATATGATGCTGTCACATCGCTTTGGACGAGCGCGTCATGTGCTTGTGCTGGTGTTGTGTCTGTCTGCGGCTGAGGACTTCGACTGGTCAGCGAACAACCACGACTCCTTCTATTATGGCACTTTTCCAAATGGATTTTCGTGGGGAGCCGGCAGTTCAGCCTATCAGACAGAAGGAGCCTGGGACAAAGATGGGAAAGGACTGAGCATCTGGGATGTGTTCACTCATAAGAAGGGAAAGACGTTCTTGAATGATACTGGAGACTCTTCATGTGAGGGATACTACAAAATCAAGGATGATATTTTGTTGATGAAAGAGCTGAATCTGAATCATTATCGGTTCTCCATCTCCTGGCCCAGGGTCATGCCAACTGGTATCAGGTCTGACCATGTGAATGAGAAAGGACTGAAGTACTACAATGTTCTTATTGATGAGCTGCTTGCAAACAATATCACACCCATTGTGACTCTGTATCATTGGGACCTGCCACAGGTTTTGCAAGAGAAATATGGTGGATGGCAGAACATCAGCATGATTAATTATTTCAATGATTTTGCCAACCTTTGCTTTGAACGATATGGGGACCGTGTGAAATACTGGATAACTTTTAATAACCCATGGGTATGCTCACTCTATTCATCTCTCCTTAATAACAGCAAATTAAATACATGTGAAAAGGATATGCTTATTAATGTGCTCATTGTGTGTCAGTCAGTGGCAGTGGAAGGATATGAAACTGGAGAACATGCTCCAGGACTGAAGCTCAGGGGCACTGGGGCCTACAGAGCAGCTCACCACATCATTAAGGCACATGCTAAGGTTTGGCACACTTACGATTCTCAGTGGCGAAGCAAACAAAAAGGTATGGTGGGTATTTCACTGTCCGGGGACTGGGGAGAGCCTGTGGACATCACTAACCAGAAGGACATTGAGGCTGCAGAGAGATATGTGCAGTTTTACATAGGCTGGTTTGCTACACCCATCTTCCATGGAGATTATCCTCAAGTGATGAAGGATTTCATAGGGAGGAAAAGCGCACAGAAGGGCTTGGGAACGTCTCGCCTTCCCACCTTTTCCTCTCAGGAGAAGAGTTACATCAAAGGCACCTGTGACTTCCTTGGCGTGGGACACTTCACGACACGCTACATCACCCAAAAGAGCTTCCCTCCCAACCGTGGCACCTCCTACTTCTCAGATCGGGATATAGCGGAGCTGGTCGACCCACGTTGGCCTGATCCTGGTTCGGAGTGGCTGTACTCGGTTCCTTGGGGCTTTCGCCGTCTGCTCAACTTTATAAAGACTCAATATGGGAACCCCATGATGTTCATCACTGAGAACGGGGTCTCAGAGAAGATGATGTGCACAGAACTGTGTGATAACTGGAGGATACAGTATTACAAGGATTATATCAATGAGATGCTCAAAGCTATCAGGGATGGAGTGAATGTGAAGGGCTACACCGCCTGGTCCCTGCTGGACAAGTTTGAGTGGGATGAGGGTTATTCAGAGAGGTTCGGCCTGTACTACGTAGACTTCAAGAACAAAAATAAACCTCGCTTCCCCAAGGCCTCTGTTCAGTTCTACAAACGCATCATTAAGTATAATGGATTTCCCAATCAAAGAGAGGTTGAGAACTGGAAGAGGAAAGCTACAGAGACTTGCTCCACCAGCAATCATCTCCTGGCTGCAGAGGAACAGCGGAATACGGCTGCCAATATTCTAAGACTTATTCATGATCCTTTAATCAGCCACATGGAGATGGTGACCGAGGTTGTGGTTCCCACAGTGTGCACCCTCTGCATTTTGATCAGCGCTGTCTTTCTCATGTTCCTATTGCGCAAACGTAACTAGCTCACTTTAGGAAAAAGAAAAAAAAAAGAAAAAAGAAAAAAAAGATTTGCCCTTGTTTTTTATTTAATACTCTTTGCAGGCAGGGAGGTTGAGGTTAAGAATACTATGCTAAATTTTAAAAGGTACACTACTTAACTTTTGGCCCTCTCAAAAACATTAAAAAAACTTTTGAACAGTATCGTACACAAAAAAAACACCACAAATTAAAACTATTGCATTAAACAA

Function

symbol description
lctlb Predicted to enable beta-glucosidase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human LCTL (lactase like).
lctl Predicted to enable beta-glucosidase activity. Predicted to be involved in carbohydrate metabolic process; lens morphogenesis in camera-type eye; and visual perception. Predicted to be located in brush border and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

NR:

description
lactase-like protein-like, partial

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_04542059_04550082.mRNA True 2102 mRNA 0.45 13 4542059 4550307

Neighbor

gene id symbol gene type direction distance location
CI01000013_04505188_04527744 NA coding upstream 14187 4505145 ~ 4527872 (+)
CI01000013_04425884_04426805 NA coding upstream 115049 4425748 ~ 4427010 (+)
CI01000013_04344339_04347938 AAGAB coding upstream 193976 4344339 ~ 4348083 (+)
CI01000013_04316134_04317091 NA coding upstream 224861 4316134 ~ 4317198 (+)
CI01000013_04084679_04088148 NA coding upstream 452437 4083814 ~ 4090171 (+)
CI01000013_04612468_04618550 NA coding downstream 61747 4612054 ~ 4619000 (+)
CI01000013_04657029_04672057 MEGF11 coding downstream 106496 4656803 ~ 4672742 (+)
CI01000013_04673313_04707104 MEGF11 coding downstream 122909 4673216 ~ 4707470 (+)
CI01000013_04720501_04724747 NA coding downstream 170194 4720501 ~ 4724940 (+)
CI01000013_04750261_04754885 NA coding downstream 199954 4750261 ~ 4756045 (+)
G80818 NA non-coding upstream 11444 4530368 ~ 4530615 (+)
G80817 NA non-coding upstream 16410 4525377 ~ 4525649 (+)
G80815 NA non-coding upstream 19408 4522418 ~ 4522651 (+)
G80814 NA non-coding upstream 20613 4521208 ~ 4521446 (+)
G80812 NA non-coding upstream 24691 4517155 ~ 4517368 (+)
G80828 NA non-coding downstream 12930 4563237 ~ 4564657 (+)
G80827 NA non-coding downstream 14858 4565165 ~ 4565347 (+)
G80829 NA non-coding downstream 16451 4566758 ~ 4567003 (+)
G80830 NA non-coding downstream 20891 4571198 ~ 4571553 (+)
G80831 NA non-coding downstream 21457 4571764 ~ 4572100 (+)
CI01000013_04051081_04064651 NA other upstream 476230 4050837 ~ 4065829 (+)
G80062 NA other upstream 957275 3584008 ~ 3584784 (+)
G79309 NA other upstream 2074888 2466765 ~ 2467171 (+)
G77695 NA other upstream 3589090 946521 ~ 952969 (+)
G77533 NA other upstream 3832510 708833 ~ 709549 (+)
G80845 NA other downstream 284771 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 1505991 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 1528255 6075400 ~ 6081684 (+)
G81994 NA other downstream 2785638 7335945 ~ 7338239 (+)
G82168 NA other downstream 3478031 8028338 ~ 8041343 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013382 lctlb coding NC_007129.7 CM002902.2 19463425 ~ 19484919 (-)
bowfin (Amia calva) AMCG00007437 lctl,LOC105892386,LOC102794608 coding CM030123.1 CM030123.1 18575842 ~ 18584276 (+)