CI01000013_04774039_04780331 (VWA9)


Basic Information

Item Value
gene id CI01000013_04774039_04780331
gene name VWA9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4774039 ~ 4780762 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_04774039_04780331.mRNA
ATGCCCACTGTGGTTCTTATGGACTCGTCGCTGTCCATGACACGACCGGTGTCAGTGGAGGGCAGTGAAGAGTTTCAGAGAAAGAACCTGGCTGTTCATGGACTGACCATGCTGTTTGAACACATGGCCACAAACTACAGGATGGAGTTCACTTCACTTGTCGCCTTCTCCTCGCTCTGGGAGCTTCTGGTGCCATTCACCAGAGACTACAATACTCTGCAGGAAGCCTTGAACAACCTTGAAGACTATGATAAAACCTGCCTGGAGGCTGCATTACAAGGTGTTAGTAATATAGTACAGCAGGAGTGGGGAACCTCTTGCCCATGCCAGGTGGTGCTGGTTACTGATGGTGCACTGGGCATTGGTCGTGGATCTTTGCGTCACTCCCTACAAACAGTGAAACAACGTGTGGAGGACAAGAAATTCCCACTTCCTTTCCCATTCCCTTCCAAACTCTATATCATGTGCATTGCCAATGCAGAGGAGCTCCAAGCTACAGATGGTATGGATAACTTAGAGCAGCTGATTAATTTGAATGGTGGAGAGGGTCAGATATACACTATGGAGGGACCCCTTTGTCTGAAAAGTGTCCAGTCTATGTTTGGTAAGTTGATTGACCAGGCGTACTCTCCTTTCCATGCGGTGCTGCGCTGTGGGAACCTGACCTCTGATGTGCAGGTCTTTCCCAGGCCAGAGCCAGTGATTATAGATGAGGAAGTGGATCCTTTGCCCAAAACAGTGCAAACAGAGGGGGATGAGATGGGTACAGGGACCTCTGATGAGACAGAGGAAGAGACCTCCACAAATCAGATGGCTGGCAAAAGCCCAAACTTCTGCGTTCTTCTACATGGCAGCCTAAAGGTGGAGGGCATGGTGGCACTTGTACAACTAGGGCCAGAGTGGTTCGGAATGCTTTATTCCCAGGCAGACAGTAAGAAGAAGTCCAATCTAATGATGTCACTCTTTGAGTTCGGCTCAGAGCCTCTGCCCTGGTTGGGCAGAATATCACAGCTTGGACCTGCCTCAGATGCAGCTGAAAATCCCTATGGTGAAGATGACAGTAAAAGTCCTTTTCCCATACAGCCAAAAAACAAGAGAAGCTATGCTCAGAATGTTACTGTCTGGATTAAAGCCAGTGGACTGCAGACAGATGTACAGAAAATTCTCCGTAATGCAAGGAAATTGCCAGAAAAAACACAAACATTCTATAAGGAATTGAACCGTCTTCGGAAGGCCGCTCTCGCCTTTGGTTTCTGGGAGCTTCTGAAGAGTGTGGCTGAACTTCTGGAGAGAGAGTGCACTCTGCTGCCTGACTCCGCCCACCCTGATGCCGCTTTCCAGCTGTCACATGCTGCCCAGCAGCTTAAACTGGCCAGTAGCGGAGACTCTAAATATGCGGCCTTCGAACATAACATCACCCCCATGCTAACTGATTTCTCAGGGGGAGGAGGAGCCGAGAGAATATAGAGGCTAAATGGAGGAACAACACTCAATGGACAACTACCAGATCAGTTATAAAGGAATGTACCTTTATCTAAAAACTCTGCTCAATGTGTAATGTTCATCCAAGGAAAATAGGTTACTGTATCAGGATCACACAAATGTGGCATTTCAATGTTTTAGTAGTGCCGCAAAGGTTGGGTTTGCTGTTTTGATGATAGGTATAAAACAAGAGGAAACCTTGGACTTTGTAACAAATTATGATGTTGAGCACTCAATTTGAGGAAAGAAAAACATTCAGTTTTCCAAGAAAATGCATTTAGAGGCTTTGGAATCTATTTTCAGGCCAGTAACTTTGTGTAAATATTTTTTTTCTAACATTGACTAATAGAAAACTGTCTAGTTTATGTTTAATGATAGTCATCTGAAAATCAATGTTTTGTTTCACTGAAATTTAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_04774039_04780331.mRNA True 1898 mRNA 0.46 10 4774039 4780762

Neighbor

gene id symbol gene type direction distance location
CI01000013_04760068_04760352 NA coding upstream 13665 4760007 ~ 4760374 (+)
CI01000013_04750261_04754885 NA coding upstream 17994 4750261 ~ 4756045 (+)
CI01000013_04720501_04724747 NA coding upstream 49099 4720501 ~ 4724940 (+)
CI01000013_04673313_04707104 MEGF11 coding upstream 66569 4673216 ~ 4707470 (+)
CI01000013_04657029_04672057 MEGF11 coding upstream 101297 4656803 ~ 4672742 (+)
CI01000013_04788303_04790895 PPCDC coding downstream 7541 4788303 ~ 4791025 (+)
CI01000013_04805165_04810980 NA coding downstream 23717 4804479 ~ 4810980 (+)
CI01000013_04837614_04840771 NA coding downstream 56852 4837614 ~ 4841571 (+)
CI01000013_04854576_04864881 NA coding downstream 73814 4854576 ~ 4865227 (+)
CI01000013_04869003_04877964 AARS coding downstream 88203 4868965 ~ 4878377 (+)
G80879 NA non-coding upstream 3501 4770310 ~ 4770538 (+)
G80875 NA non-coding upstream 55742 4718083 ~ 4718297 (+)
G80834 NA non-coding upstream 61510 4709807 ~ 4712529 (+)
G80826 NA non-coding upstream 196126 4577531 ~ 4577913 (+)
G80832 NA non-coding upstream 200707 4572802 ~ 4573332 (+)
G80842 NA non-coding downstream 35708 4816470 ~ 4818947 (+)
G80850 NA non-coding downstream 45556 4826318 ~ 4828164 (+)
G80893 NA non-coding downstream 68677 4849439 ~ 4849797 (+)
G80919 NA non-coding downstream 138221 4918983 ~ 4919289 (+)
G80798 NA non-coding downstream 196487 4977249 ~ 4977687 (+)
CI01000013_04051081_04064651 NA other upstream 708210 4050837 ~ 4065829 (+)
G80062 NA other upstream 1189255 3584008 ~ 3584784 (+)
G79309 NA other upstream 2306868 2466765 ~ 2467171 (+)
G77695 NA other upstream 3821070 946521 ~ 952969 (+)
G77533 NA other upstream 4064490 708833 ~ 709549 (+)
G80845 NA other downstream 54316 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 1275536 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 1297800 6075400 ~ 6081684 (+)
G81994 NA other downstream 2555183 7335945 ~ 7338239 (+)
G82168 NA other downstream 3247576 8028338 ~ 8041343 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013369 ints14 coding NC_007129.7 CM002902.2 18995247 ~ 19006634 (-)
bowfin (Amia calva) AMCG00007447 vwa9,LOC107583765 coding CM030123.1 CM030123.1 18810855 ~ 18814928 (+)