LOC103027170 (rab5aa,LOC108411561,LOC105904716,LOC101476881,LOC103376428)


Basic Information

Item Value
gene id LOC103027170
gene name rab5aa,LOC108411561,LOC105904716,LOC101476881,LOC103376428
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019171900.1
NCBI id APWO02001498.1
chromosome length 225111
location 132397 ~ 156931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU363387
AATGCATTCcgttgttgtagtaaaacatgataaaagttcttacctttgatgaatagcacacctctcccacagcttttcaAGATCCTGCAATTATGTGCAGTTTGtacaaacatgctttagaatggacAAAACCTCTGcagaaaaatcactttttacaccgttatccaggcccAAAGTAGCACccacacctccttggtagaatccagagagccctgacatttaaatcaagttaattttactcctgagttctcctttaatatgaATCCGCTGTCACAATACTTTattatgattcaatatatcgCTATTGTTTAATTCTAATTTTTGGAAAACTGTCTTAACCTGAAAAAGCACATTATCATACTTATAAAATCTGTGTACTTagcaaaagtgctttttatccAACCAGATCGGTGAAATCTATCAACATTGGGTACAAAATTGATTGGGTGGAGTTTAAACAGAAATCGAttcagtattgcaaaacaaaggaCAGTGCTTTTGGATTCAtggcattacacacacacacacacacacacacacaccaatcaaccaaccaattatGACcactccttgtttctacatccTCACCAGTTTCTCAGCTACACTTGTCCTGTAGGACACTCTGTAGCTCTTACCGACCCCACTGAGAACAGTCCTCCAccagcatcctgtgggcggagtcatgtgcagcaacagatttagAGTGTCTTCACTCCATAATAGAGTGaaggacagtgagtggacacagtgtttaaaacctccagcagcacttctgCAGACAgtaggtgtagaaacaagggggtggtcataatgttatgcttggccgatatatactagtgcatcacaaaatattagagtatcattg
>TU363389
AATGCATTCcgttgttgtagtaaaacatgataaaagttcttacctttgatgaatagcacacctccgctctcccacagcttttcaAGATCCTGCAATTATGTGCAGTTTGtacaaacatgctttagaatggacAAAACCTCTGcagaaaaatcactttttacaccgttatccaggcccAAAGTAGCACccacacctccttggtagaatccagagagccctgacatttaaatcaagttaattttactcctgagttctcctttaatatgaATCCGCTGTCACAATACTTTattatgattcaatatatcgCTATTGTTTAATTCTAATTTTTGGAAAACTGTCTTAACCTGAAAAAGCACATTATCATACTTATAAAATCTGTGTACTTagcaaaagtgctttttatccAACCAGATCGGTGAAATCTATCAACATTGGGTACAAAATTGATTGGGTGGAGTTTAAACAGAAATCGAttcagtattgcaaaacaaaggaCAGTGCTTTTGGATTCAtggcattacacacacacacacacacacacacacaccaatcaaccaaccaattatGACcactccttgtttctacatccTCACCAGTTTCTCAGCTACACTTGTCCTGTAGGACACTCTGTAGCTCTTACCGACCCCACTGAGAACAGTCCTCCAccagcatcctgtgggcggagtcatgtgcagcaacagatttagAGTGTCTTCACTCCATAATAGAGTGaaggacagtgagtggacacagtgtttaaaacctccagcagcacttctgCAGACAgtaggtgtagaaacaagggggtggtcataatgttatgcttggccgatatatactagtgcatcacaaaatattagagtatcattg
>XM_022662979.1
gtggagagagagagagagaatctccCCCCGAACCGAACCGAACCGGACCGACCCGAACCCGCCCAGCCCGGAGCCCGAACCGCCCGGAACGCCCGCACCTCCCGGACCGCCCTACACCGCTCCACTCCTGCAGCTCTTACGGGaacagtgagtgtgagtgtaccAGAAGGAGAAGGGGACATTGACCGCTGTCATGGCCAATCGGGGAGGAGCGACCCGGCCCAACGGGCCCAACGCGGGCAATAAGATCTGCCAGTTTAAACTGGTCCTGCTGGGAGAGTCGGCTGTGGGCAAGTCCAGCCTTGTGCTTCGATTCGTTAAGGGCCAGTTCCATGAGTTTCAGGAGAGCACAATAGGAGCGGCCTTCCTGACGCAGACAGTGTGCTTGGATGACACAACGGTGAAGTTTGagatttgggacacagccggacAGGAGCGCTACCACAGCCTGGCTCCCATGTACTACAGAGGTGCTCAGGCGGCCATCGTGGTCTATGACATCACCAACGAAGAGTCGTTTGCGAGAGCAAAGAACTGGGTGAAGGAGCTCCAGAGGCAGGCCAGCCCGAACATAGTCATCGCTCTTTCTGGAAACAAGGCGGATCTCGCCAACAAAAGAGCTGTTGACTTCCAGGATGCCCAGTCTTATGCGGATGACAACAGTTTGCTATTCATGGAGACATCAGCGAAGACCTCCATGAATGTGAATGAGATTTTCATGGCCATTGCTAAAAGATTGCCCAAGAGCGAGCCCCAGGCTGCGGGAACCAACAGTGGGCGGAGTCGGGGCGTGGACCTAACAGAGACAGCCCCACCCGCCAAGGCTCCCTGCTGCAGCAACTAATGCAAACACCAAACTCTGTTACCACGACAACTAACGCAAGGCCCCGCCCCCTCTCCCCGCTCTGTTCACTTCCGTAACTTTCGGTGGCCAGCAGTAACAAAACCTCCGCCCTGCCCTTCTGCGTCTTCTGTCCGTGTACAGGCCCTTCATTCTGCTTTCTGAAGGTTACGGCTTGTGTCCAAACATTACTCTGCTTTCACCAATTCTCTCATccggaaaaaaattaaataaataaaaaacatatacaaaatcCTCCTTACGCCATTGGCTAGCCTGAGGCAGGAGGGCAGGGCTTCTGCAAGAAACCCCTCCTCCTCCGCTTTTCCCTTTTCCCATCATCCTGTATCAGCTAAAGACTCTATAGCTTATATTTCTCAGACATAAATCtccttttgtcttgttttttttttagttctgtttctttgttttctccttttttattatgtttatgttttatagaAATATACTTTGCAGAATAATGGATGCATGTTTCACTACAAGGCCTGAAATGAAATCAAAAGTTTTAACCTTATTCAACGGCACAAGCAGTGAGAGAGGATGAGACGGACTGCCCATGAGCCCTCTTTCACCTTTATCTCTCCTTTTTCTTGTTTCTATACCACCTCctccctccttttctcctcACACTTCACCCAGCTCAAAACCTCACCTCCTTACCCTCACCCCAGCTCAGCTCATCCTTCCTGTAGGCCTGCTCTGCTTCTGGTGCCCCAGGGGCAGCGTGCAATATCTGATATGTCCACTTATTCTGAATGAAGTTGTACAAGAAACTAACCACCCTGTTATTAATATacttatgcacacacacacacacacactgctacacacacccacacacacccctacACACCTACAGATATTAGTCACCTCCCCTTACCAACGTCTTAcagccaatttatacttctgtgtcgaACCTACGCCATACCCTACGCCGAGGCTCAAATCGCGCACCTCCCTTGAAATGTTGCTACGTGTCATGGACAgccgcagctgtgattggtccgccgGGCCTCACGTTCCCGCCCACACATTCCCGTCTTCGCTGTTTGAACTGCAGCGCGATGCAGAGAATAGCACACTCTCGCTGGAGACCTGCAGGCTATGGCGTACGTTCGAAGCGAAAGTATAAATTGGGCTTTACAGTATGTGTCCACTAGGGCTGTGCATTGGCATTGGCAAGAATTTAgcattttaaaggagaactctgatgtaaatttgacttttgttgtagtaaaacatgataaaaagtacttacctttgatgaatagcacacctccgctctcccacagcttttcaAGATCCTGCAATTATGTGCAGTTTGtacaaacatgctttagaatggacAAAACCTCTGcagaaaaatcactttttacaccgttatccaggcccAAAGTAGCACccacacctccttggtagaatccagagagccctgacatttaaatcaagttaattttactcctgagttctcctttaatatgaATCCGCTGTCACAATACTTTattatgattcaatatatcgCTATTGTTTAATTCTAATTTTTGGAAAACTGTCTTAACCTGAAAAAGCACATTATCATACTTATAAAATCTGTGTACTTagcaaaagtgctttttatccAACCAGATCGGTGAAATCTATCAACATTGGGTACAAAATTGATTGGGTGGAGTTTAAACAGAAATCGAttcagtattgcaaaacaaaggaCAGTGCTTTTGGATTCAtggcatta

Function

symbol description
rab5aa Predicted to enable GTPase activity. Predicted to be involved in several processes, including regulation of endocytosis; regulation of filopodium assembly; and regulation of long-term neuronal synaptic plasticity. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Is expressed in brain and trunk. Orthologous to human RAB5A (RAB5A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-5A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07887 RAB5A; Ras-related protein Rab-5A

RNA

RNA id representative length rna type GC content exon number start site end site
TU363387 False 865 lncRNA 0.40 2 152459 156931
TU363389 False 870 lncRNA 0.40 2 152459 156931
XM_022662979.1 True 2597 mRNA 0.48 6 132397 156581

Neighbor

gene id symbol gene type direction distance location
LOC103027458 LOC108414277,LOC107697141,LOC107592100,LOC107739637 coding upstream 49004 13473 ~ 83393 (+)
LOC103026885 kat2b,LOC108411559,LOC107748684,LOC107592021,LOC107593605,LOC107696888,LOC107739562 coding downstream 6483 163414 ~ 180608 (+)
trnae-cuc_29 NA coding downstream 27870 184801 ~ 184872 (+)
trnae-cuc_30 NA coding downstream 28527 185458 ~ 185529 (+)
trnae-cuc_31 NA coding downstream 29184 186115 ~ 186186 (+)
trnae-cuc_32 NA coding downstream 29841 186772 ~ 186843 (+)
G265378 NA non-coding upstream 31460 100704 ~ 100937 (+)
G265376 NA non-coding upstream 39438 92676 ~ 92959 (+)
G265373 NA non-coding upstream 45872 86322 ~ 86525 (+)
G265371 NA non-coding downstream 92 157023 ~ 159078 (+)

Expression


Co-expression Network