G265371


Basic Information

Item Value
gene id G265371
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019171900.1
NCBI id APWO02001498.1
chromosome length 225111
location 157023 ~ 159078 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU363391
ttatttcttttattgttgatgattatgaagcttacagccaatgaaaacccaaaaatcagtgtctcagataaTTTGGATATACTACAAGACCaagtggtacttttggcagtgtcctgctgaaaaatgaaatccagagCAGGGGGTAGCATAAAgtagactgtgtgtctctccactcttcctccagactctgctcccttgatttacaaataaaatgtaaaatttactgatgatcagtgatggtttggagagacatgctgatcatctgctggtgttgatccactgtgttttattataaagtctaaagtcagtgcagttttgttttcccgcaaaatcttacagcacttcatgcttccctctgctactgacaactttttttttggagatgcagatttccttttccagcaggacttggcacactgcctacattgccaaaagcaccaactgaaataagaaataaacacttaaaatagaacactctgtgtgtaacacatctatataatatatgagtttcacattttgatctgaattactgaaataaagtaacttttcaatgatactcaacattttttgagatgcacctataTATGTGAgcacaaacatatatacaagCAGTTCTCTGGCCAGTCGTGTTAAGGCTTTACTGGTTTATCAGCACAGTTATTTTGGCACAGTCTGAGCGTGTCGGTCAGCATGTTCGAGGATTTACAGGGCTCGACTCTGTAACACTGCAGTCCTGTATTAAAACCCTTCACACACTTTGACTGGGTACACACTTCTCCACACACCTGATAAATCGTCCTTTATTCTTCCATCCTCCCTTCCTCAAACACAAGCCTGATGctaatctatctctctctctctttgtttctctctttctttctctctctctctctctctctctctctctctctttagttttAACACACCCAGGTGTTTCTTACTCCATGCCTTGCACTAATTTTGTTCATGAATTGATCTGCTCTAAATACAGCCAGtgtgatataaatatatatataaataatttactgtaaataggGTGTTGCAATGTAGTCTACTTTTCCATTTACTGTTGCAGAACTAATGCTTGATAGGGAGTTGTCTagataatcattaaaaaaaacaattgtacaGTAACCAGAAACTGCTTTGATAGGGGTTTGGacttatgtttctttttttttttcacaaaatggTTAAATTATAATCAATGGTGGTCTTATAAATGTATGTAGTgttattaacaaaaacaaaataagagaaacaaaTATCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU363391 True 1273 lncRNA 0.36 2 157023 159078

Neighbor

gene id symbol gene type direction distance location
LOC103027458 LOC108414277,LOC107697141,LOC107592100,LOC107739637 coding upstream 73630 13473 ~ 83393 (+)
LOC103026885 kat2b,LOC108411559,LOC107748684,LOC107592021,LOC107593605,LOC107696888,LOC107739562 coding downstream 4336 163414 ~ 180608 (+)
trnae-cuc_29 NA coding downstream 25723 184801 ~ 184872 (+)
trnae-cuc_30 NA coding downstream 26380 185458 ~ 185529 (+)
trnae-cuc_31 NA coding downstream 27037 186115 ~ 186186 (+)
trnae-cuc_32 NA coding downstream 27694 186772 ~ 186843 (+)
G265378 NA non-coding upstream 56086 100704 ~ 100937 (+)
G265376 NA non-coding upstream 64064 92676 ~ 92959 (+)
G265373 NA non-coding upstream 70498 86322 ~ 86525 (+)
LOC103027170 rab5aa,LOC108411561,LOC105904716,LOC101476881,LOC103376428 other upstream 92 132397 ~ 156931 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G134277 NA non-coding NC_053124.1 CM020921.1 17387891 ~ 17442212 (-)
bowfin (Amia calva) G87622 NA non-coding CM030130.1 CM030130.1 24988401 ~ 24994242 (-)
tiger barb (Puntius tetrazona) G73905 NA non-coding NC_056708.1 CM032077.1 1490218 ~ 1490490 (+)