trnag-ucc_23


Basic Information

Item Value
gene id trnag-ucc_23
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019171985.1
NCBI id APWO02001583.1
chromosome length 114847
location 113788 ~ 113859 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnag-ucc_23
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTGacccgggttcgattcccggccaaCGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnag-ucc_23 True 72 tRNA 0.58 1 113788 113859

Neighbor

gene id symbol gene type direction distance location
G267497 NA non-coding downstream 18384 94289 ~ 95404 (-)
G267493 NA non-coding downstream 34139 77601 ~ 79649 (-)
trnaa-agc_29 NA other downstream 419 113297 ~ 113369 (-)
trnag-ucc_22 NA other downstream 1173 112544 ~ 112615 (-)
trnaa-agc_28 NA other downstream 1663 112053 ~ 112125 (-)
trnag-ucc_21 NA other downstream 2417 111300 ~ 111371 (-)
trnaa-agc_27 NA other downstream 2907 110809 ~ 110881 (-)
trnaa-agc_30 NA other upstream 682 114541 ~ 114613 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnag-ucc-258 NA coding NC_048592.1 CM023246.2 26615062 ~ 26615133 (-)
eurasian perch (Perca fluviatilis) trnag-ucc_11 NA coding NC_053125.1 CM020922.1 33202101 ~ 33202172 (-)
striped catfish (Pangasianodon hypophthalmus) trnag-ucc_32 NA misc NC_047623.1 CM018569.1 12579059 ~ 12579130 (+)
tiger barb (Puntius tetrazona) trnag-ucc_28 NA coding NW_025048114.1 JAEQBD010000459.1 758224 ~ 758295 (+)
tiger barb (Puntius tetrazona) trnar-acg_19 NA coding NC_056702.1 CM032071.1 26285797 ~ 26285869 (-)