trnag-ucc_11


Basic Information

Item Value
gene id trnag-ucc_11
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 33202101 ~ 33202172 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_715
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTgacccgggttcgattcccggccaacgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_715 True 72 tRNA 0.58 1 33202101 33202172

Neighbor

gene id symbol gene type direction distance location
LOC120572914 NA coding downstream 10015 33186655 ~ 33192086 (-)
LOC120572926 NA coding downstream 42817 33158690 ~ 33159284 (-)
LOC120572772 LOC103367226,LOC104955725 coding downstream 111444 33084338 ~ 33090657 (-)
LOC120572785 NA coding downstream 128966 33063196 ~ 33073135 (-)
LOC120572924 NA coding downstream 146601 33049359 ~ 33055500 (-)
LOC120572913 LOC101063171,LOC108228415 coding upstream 69754 33271926 ~ 33272485 (-)
LOC120572848 NA coding upstream 297828 33500000 ~ 33502560 (-)
LOC120572824 NA coding upstream 304666 33506838 ~ 33509846 (-)
LOC120572860 LOC106676966 coding upstream 320939 33523111 ~ 33524779 (-)
LOC120572617 NA coding upstream 323087 33525259 ~ 33527936 (-)
G148563 NA non-coding downstream 4524 33177386 ~ 33197577 (-)
LOC120573033 NA non-coding downstream 26597 33159293 ~ 33175504 (-)
G148543 NA non-coding downstream 225918 32973356 ~ 32976183 (-)
G148537 NA non-coding downstream 252918 32947734 ~ 32949183 (-)
G148533 kif1c,LOC106511699 non-coding downstream 262262 32935073 ~ 32939839 (-)
G148571 NA non-coding upstream 67234 33269406 ~ 33270814 (-)
G148572 NA non-coding upstream 68782 33270954 ~ 33271812 (-)
G148557 NA non-coding upstream 75589 33277761 ~ 33279405 (-)
G148560 NA non-coding upstream 100014 33302186 ~ 33304042 (-)
G148559 NA non-coding upstream 108045 33310217 ~ 33312620 (-)
LOC120572612 NA other downstream 69426 33110199 ~ 33132675 (-)
G148509 NA other downstream 239868 32831676 ~ 32962233 (-)
G148536 NA other downstream 256295 32945345 ~ 32945806 (-)
G148472 NA other downstream 446740 32731080 ~ 32755361 (-)
G148453 NA other downstream 501696 32652556 ~ 32700405 (-)
corin nfxl1,corin,LOC102297304 other upstream 19563 33221735 ~ 33341537 (-)
LOC120572843 NA other upstream 293541 33495713 ~ 33498046 (-)
G148879 NA other upstream 522493 33724665 ~ 33789375 (-)
G148918 NA other upstream 818400 34020572 ~ 34021079 (-)
LOC120572826 NA other upstream 844065 34046237 ~ 34201855 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnag-ucc-258 NA coding NC_048592.1 CM023246.2 26615062 ~ 26615133 (-)
striped catfish (Pangasianodon hypophthalmus) trnag-ucc_23 NA coding NC_047608.1 CM018554.1 1972909 ~ 1972980 (+)
striped catfish (Pangasianodon hypophthalmus) trnag-ucc_32 NA misc NC_047623.1 CM018569.1 12579059 ~ 12579130 (+)
tiger barb (Puntius tetrazona) trnag-ucc_28 NA coding NW_025048114.1 JAEQBD010000459.1 758224 ~ 758295 (+)
mexican tetra (Astyanax mexicanus) trnag-ucc_23 NA misc NW_019171985.1 APWO02001583.1 113788 ~ 113859 (-)