G305937


Basic Information

Item Value
gene id G305937
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172844.1
NCBI id APWO02000113.1
chromosome length 4686185
location 2429406 ~ 2513918 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU421321
gaaaaaagtggaaaataaaaactagGAAATAAAAAGTCAGACAACTTGACGGAACATCACAGAAATGGAAGGAACAAAAGAAAGATTCACAATTATAGATTCAATCGAATTAGGAAACAATTGGTCTTCTACTCAATAGTAAATTTCTGCTTGTGGATTGCTTTTCCTGCAGACAATTGCTTGAGATGTGAACAGCGACCCAtttcctgcttttttttaatggttactCTGTTTTAACTCCCTTTTGGTTAACATCCACTTACCAATAAAGTGGTATTCCCTCCTTTAGTAGGTAAGGTATGAAGAGAAGGGAAAAGTGGGGCAACATAAGTGCATCATTAGATTCACAAAATGCAAGAGAAAAAGACACAACACCCTTCCCTGGTAGTGAGCATGAGACAATGCATggaaatcaaaccaaacagacacaccaaatcaaatcaaatcaaatcaaatgaaaaaaacaaaagaaaatcaaaacagATTCATCACTTAGGCCTAAagaaatcatcatcatcattgttataatcatcatcattcatcaggTGGGCTGGGGACACTCAGCACGTTCCTCAGAACCACTGGCCTTCACACAGCAGGTGATTCTGATCTTTAGCAGAGCTGATAAGAGCGAGAGGTTTGGGTGATTTAGAACAGAGAGAGCAGTTGACTGAGTGAACGGTCAGTAAAGCAGGCATGCACAGAAGTTTCAGTAAAAGAAGGACGCTGTCTGGAAACAGACACCACACACTGACCGCTCTCATACTGCGGTGGAAAACTACAAACTCAAGACTGACCACTTTAATCTTACCTCAGTATGGCTATAGAACATTTAGTGATATAAGAACCTTTCAGATACAAGAACATCTGACCCTCTGTTCATCATCTGTcatcactgcactgacctgatacctcatgatttttttcatgtgtttgttaTGGAACGTCTACCTTCCTCACAAAAtatgaatacatttaaatttgtattcTAGGAATGTAAATCTTTAAGTAATAGCAGAGTGCCTTAATGAACTGTGTTGTGCTTTTGCAGAATGGCTTTCTAGGAATTTTGTTAGGGCTGTTTTCACACCAATTTCGTTTTCAGATTGTTCAGATTGTTTGGTCAAGTGTGAACACTTTATTTTCACCTGCACATCAAACATTTGTCACATGGTTTCTAAATGAGCACCATTTCCactctttttttcaattttttatcaAGCAAACACTGAGACCTGGACTTTTGTTTAGTGggacttttttaatttaagcataaaaactaaacattgtctttgtacaggaagttgtttttgcaacaacaaaaaaaaaacaatggccaTATATAAgtatagtattttttattatagggTCCTATTTATGCTAAaatgtctggactggctgtaaaaacttATGACAGGGATCCccgccatcttgttttcaatcaattgagtgtaatgttgtcatgtgaccactagatgatacaagcagtgtctccatatgaggacAAAGGGTCAACATGTTAAAAATAAGTATCATGATGCAGATATGAGAATGCACATTAAACATCCGTCATGTAATTtctatcagtttttttttcaaaccctTGGTTTAGTTTGATGACTTGTTTTGCTATTGATATATTGTTTTACAAATTATTGTGGTACATGatataccacttcagtttctgaatcagtttctctgattttgctattaatagatttatatttgagtaaaatgaacaatgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaatattgtaatttagagcatttatgtgcagaaaatgagaaatggctgaaataacaaaaaaagcattCAGTCCTtcaaacaagtttatattcataaattttaagagttcagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU421321 True 1908 lncRNA 0.35 2 2429406 2513918

Neighbor

gene id symbol gene type direction distance location
LOC103041195 ywhag2,ywhag1,LOC103041195,LOC101156793 coding upstream 49987 2358223 ~ 2379419 (+)
ssc4d LOC108437629 coding upstream 80245 2308902 ~ 2349161 (+)
LOC103021345 hpd,LOC108413266,LOC105896091,LOC108260398 coding upstream 571907 1833929 ~ 1857499 (+)
LOC103047625 LOC108444136 coding upstream 739066 1686149 ~ 1690340 (+)
gusb gusb,LOC107719352,LOC107701859,LOC107734369,LOC107654306,LOC104964597 coding upstream 931625 1474174 ~ 1497781 (+)
rpain rpain coding downstream 144374 2658292 ~ 2664548 (+)
znhit3 NA coding downstream 158996 2672914 ~ 2677483 (+)
pigw pigw coding downstream 196987 2710905 ~ 2714830 (+)
ggnbp2 ggnbp2,LOC107725125,LOC107591474,LOC107734343 coding downstream 202726 2716644 ~ 2734477 (+)
LOC103044981 ssr4,LOC108425558,LOC108275523,LOC106567025 coding downstream 221779 2735697 ~ 2743004 (+)
G305932 NA non-coding upstream 8675 2419780 ~ 2420731 (+)
G305931 NA non-coding upstream 12439 2412417 ~ 2416967 (+)
G305921 NA non-coding upstream 31208 2396975 ~ 2398198 (+)
G305928 NA non-coding upstream 37745 2391303 ~ 2391661 (+)
G305916 NA non-coding upstream 86429 2342741 ~ 2342977 (+)
G305961 NA non-coding downstream 95883 2609801 ~ 2610098 (+)
G305981 NA non-coding downstream 164517 2678435 ~ 2678990 (+)
G305982 NA non-coding downstream 165269 2679187 ~ 2679660 (+)
G305983 myo19 non-coding downstream 169793 2683711 ~ 2687334 (+)
G305986 myo19,LOC107664759,LOC107591502,LOC107725124,LOC107734362,LOC107562201 non-coding downstream 175040 2688958 ~ 2695749 (+)
supt4h1 supt4h1,LOC107654296,LOC107563417,LOC107591514 other upstream 369963 2053489 ~ 2059443 (+)
LOC103037428 LOC102220786,LOC107090330,LOC105008281,LOC102785725 other upstream 889789 1537733 ~ 1539617 (+)
LOC103046701 LOC108429729,LOC108260270 other upstream 1147920 1261566 ~ 1281486 (+)
LOC103021301 NA other upstream 1628003 782797 ~ 801403 (+)
LOC103029847 fam222ba,fam222b,LOC108437643,LOC106567988 other downstream 577835 3091753 ~ 3127459 (+)
emc6 emc6 other downstream 684148 3198066 ~ 3200997 (+)
cenpv cenpv,LOC107676655,LOC107718355,LOC107746825,LOC107680877,LOC107552586,LOC107553589 other downstream 738276 3252194 ~ 3261495 (+)
ncor1 ncor1 other downstream 808946 3322864 ~ 3464314 (+)
G306209 NA other downstream 1024516 3538434 ~ 3539001 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030766 si:zfos-375h5.1 coding NC_007116.7 CM002889.2 3611498 ~ 3627110 (-)
grasscarp (Ctenopharyngodon idella) G372115 NA unknown CI01000171 null 518420 ~ 541319 (-)