XLOC_030766 (si:zfos-375h5.1)


Basic Information

Item Value
gene id XLOC_030766
gene name si:zfos-375h5.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 3611498 ~ 3627110 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059893
AGATATTTATTTCATgtcaggttttatttttattttttataataacctTGCAATACATCATGTTCAGTATATCAGTATTGCATTAAAGGCTTTAATGTCCAAAAAACGAGGCTTCATTACAGGCTTATCCTATAGTTTTCTTTGGATTTTGAGCTGTTAtttcaagccaacataataataataaaaaaaaaacactcagaaAGCAATTTCATGGGGTCTTCAAGCGAACTTGATGGATAACCCAATAATGCACAGCGTTGAGGTTTTCAGTGTGAAGCGAGagcatcaaaacacacacatcacagcCAGAAGAGGGAGCTGCTGTAAAACTGCCCTCAGACCGATGGTTTCCAGCCCGCACACTGTCAAATCCCTTTGACTTTCAGTTCGTTtgtgtgtctctctttctctctctttggtTTGATTTTCATGCATTGTTTCATACTCACTATCCAGGGAAGGGTGTTGTGTCTTTTTCTCTTGCATTTTGTGAATCTAATGATGCACTTATGTTGCCCCACTTTTCCCTTCTCTTCATACCTTACCTACTAAAGGAGGGAATACCACTTTATTGGTAAGTGGATGTTAACCAAAAgggagttgaaaaaaaaaacagaataaccatttatgaaaaaataaataaagcaaatgggTCGCTGTTCACTTCTCAGCAATTGTCTGCAGGACAAAAAACAAATCCACAAGCAAGATCCATTGAGTAGAAGACCTAATTCGATTCTTGTGACTCTTTAATTTCGTTCCTTCCATTTCTGTGATGTTCTGTCAAGTTGTCTTTTATTCTTttcgttttgttttcttttctagTTTTCACCTCTGTTTTGTTTGTTCGTAGCTCTTTCTGAAATTGAAAAAGTCCTCTACTTCTCTCTATTTACTCCAGTCTCTTTATATATTCTCTCTAAACTTCTTTGCGTTCACAGTTTGGCATTATATATCCCCCCTCCCCTATTTTATTtcgttttgtttctttgtttttgatTTTCTCTTTCGGGACTCTTCTTCGTTATCGAATCATTATGGTTTTGCATGCCGAGTATTGCATGCGCTGCACAATAGAGGACTGTCTATAAGCCAGACAACAATCCTAGCACTTTCTTTTAGATATTCTTTCTTGCCAAGTACACGATAACGCTCTTTCCGCCCGGCAGGAGAAAGACTCTAATTTCACTCTTCTCTTTCTGTTTGTTCCTTTTCCAcgtttatttctttttgttttatttatttccctttggTTTGTTGGTTATGATCATCTCCAGAAGCTTCCCTCGACGTCTCCTCATGTGAGAGGTGTTAAAGGAGCTGCGGCGCAGGACGACTGCGCGGATGGGAAAGCGCCGATTTCGGAGAGCGCAGGGAGACGAGGTGGTCGGACGAGGGTGAGAGAGAAGACCGAGCACTCGCCGGCGCACAGCAGCGACTCACAGCATGAGATGCACACTAAAAGCAAGAGTCAGAAGAAGACAAAGGATGCTCACTCCTCTAAGCGGCACCATCGTGGACGTGGCCAGAATCGACACCGGAGCTCATCAGTGTCTCCCGGTCGGCACAAACACGCGTCTAAAAAGAAGAAGAGCAAAAGTCACGGGACGACGCGGCAGCGGAGCAGCTCCTGGAGCAGTGGCAGGTCGACATCACGGGAACGCGGAACCAGCAAGAACAAATCACCTCACGCCCGCCAGAACAACTCCAGAGAAAGAGACAGTCCTCATCATTCAGACGCAGAGAGAGCTCGCCGCCGCTCACGCAGTTATTCCCCGATCCGCAAGAGACGGAGAGACTCGCCCAGCTTTATGGAGGCTCGCAGGATCACCAGtgcacgGAAGCGTCCGATCCCGTATTACCGTCCGAGCCCATCGTCGTCCTCCAGCTCCAGCAGTTACAGCAGCAGCTCCAGCCGGAGCCGGAGCCGCAGCCGCAGTTACAGCAGCACGTACAGCAGCTACAGCAGCCGCAGCGTCAGCCCATCACACAGTTACTACAGCCAAAGCAGCTCACACAACTCCACAACTGCACACttctagcacacacacacatcgcagtTTAAAGGTGAACTGCACTGCAAACATTAttacttacttatttaatttgtgtCATGCATTTCTTTTGTTTTCCAGTACATGATATACAGTTTTAGGCATAAATAATTGCGCAAACACATCTGATCTCAGCAGCTGATAAACATGAGCAAAACTGCCCTGAATGCTGGGTTTGTGTACAGTGTGAATATAGCTAGTCAATCGGGAAATAACTGCTTAACAAAAGTTATCAAGTACAGTCAGTCTGTACAGAACAATAGCAGACATTCAATTTGAGCAGtcggcaaacacacacacacacacacacacacacacacacaaacacacacacacacacatacacagagattTCACACATAGTTATAAATATATCCAGTGTCTCTATTTAAAGACTAAAGGCCTGAGGAACAAACATAAGATGAGCACTTTTTTCCTGAAATTCTTCCACGCTGCAAATATTACCAAAAAACTGGGTTAACAATGTTAAATCGAAAATAATCTGAAAATCCAGACACTTTATTATCATGGTGGAGATTGAGACTCATGAGAAACAAAAGCAAGAACAAACTGATTTTATTAGTTGTAGATTTTTTTATACAGGATAGTTCATCATTTGGGTGAATCTCATAAAGAAAAGTCTAAATGTTtaggaatatttttaaaaatcctcttttttatttacaagaaaagcagctttgtcatgatcaccagcaatccagcatgtgcagatcgctggtaaacacaaggtattgcatagaactacaaatctgccattaaatggactacaagatccagtcatgcaccactcacacacctggcctagatccccaTGATTGCAGACAGGCACAGCTGAAGCTACTCCAGGACTGATTATAGGACATAATAAGAGTCTTCTGTTAAATGAATTGGATACTGGACAGAGGGAGTGCGGAACCGAATGCAGGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096920

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059893 True 3002 mRNA 0.43 4 3611498 3627110

Neighbor

gene id symbol gene type direction distance location
XLOC_030765 hspb1 coding downstream 26683 3568016 ~ 3584815 (-)
XLOC_030764 NA coding downstream 56689 3553600 ~ 3554809 (-)
XLOC_030763 NA coding downstream 109663 3473865 ~ 3501835 (-)
XLOC_030761 CABZ01084961.1 coding downstream 181143 3311008 ~ 3430355 (-)
XLOC_030762 NA coding downstream 256931 3352108 ~ 3354567 (-)
XLOC_030767 FO704648.2 coding upstream 33548 3660658 ~ 3670238 (-)
XLOC_030768 FO704648.1 coding upstream 55943 3683053 ~ 3684402 (-)
XLOC_030769 mlxipl coding upstream 192080 3819190 ~ 3839285 (-)
XLOC_030770 mlxipl coding upstream 235476 3862586 ~ 3889047 (-)
XLOC_030771 c1qbp coding upstream 287293 3914403 ~ 3927763 (-)
XLOC_030760 CABZ01076744.1 non-coding downstream 345381 3258123 ~ 3266117 (-)
XLOC_030772 CU655870.1 non-coding upstream 308807 3935917 ~ 3936596 (-)
XLOC_030782 NA non-coding upstream 994320 4621430 ~ 4622063 (-)
XLOC_030783 FO834903.1 non-coding upstream 1013349 4640459 ~ 4643289 (-)
XLOC_030784 NA non-coding upstream 1043161 4670271 ~ 4673865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G372115 NA unknown CI01000171 null 518420 ~ 541319 (-)
tiger barb (Puntius tetrazona) G40995 NA non-coding NC_056703.1 CM032072.1 31423085 ~ 31506097 (-)
mexican tetra (Astyanax mexicanus) G305937 NA non-coding NW_019172844.1 APWO02000113.1 2429406 ~ 2513918 (+)