XLOC_030761 (CABZ01084961.1)


Basic Information

Item Value
gene id XLOC_030761
gene name CABZ01084961.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 3311008 ~ 3430355 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059887
ATGAGAAAAAACTGTGATGTCAATAACCCTCCGGTTCTCTCCTCCAAGAAGGGTCTGAAACGCGGCTCTGGTCCTGATCTGCTTCGGGACGTGGAGCGTCTGCGTGCGAAGCTGGAGGTGGAGCGCAGCAGGACTCAGCAGGCCCACCGCCGCTTCTCCCTGGAGCTCCAGCGGCAGCGTGAGGAGGCGCGCGAGGAGCGAGAGCGAGCGCTGAGAGAAATCACCTTCCGGCTGGAGCAGCAGAAAACACTGGAGCTCCTGCGGCAGAGAGACGCTCTGGGACGAGAGCGAGCTGCGGAGGTGCGTCGTCTGCTGCGCTGGCGGAGTCAATCCACGCTCAGACCAACCAGAGACGTCCATCGCCAACTGGCGGATGAGCTGGCTGGAGTCTGCAGATCCGCAGCTCTCAGACCCAGCTGTAAAGGGAACGGAGCTGCATATCGTAGACTGGAGGAGCTGCTGAAAACACTGCTGGAACAGGCGGATGGACAGCAGGTCGCTTTGCTTCATCGGCTTCAGCAGGAAGTGGATCTAGAGAAGAGCTACTTCCTGTGCCATCTGCTGGAAGCACACAGTCGGCCAGCACTGCAGAGGAAAGAGGAACGCAAAGAcaaagagtTTGTTGTGGAACAATCCAGGCGAAGGTCAAAGAGTTGTATACAGGTGACGGGAGGAGTCAGAGAAGGAAATCTTGCTTTATTTCGTTCTAATTCGCTATCACAGACATACAAAAGCGAATCTCCTCAACctatgaagaagaagaagaagcagcagGATTCTGAAACTCCAGCAGAAGAAGAGGCGTCTGGAGGAGATGTGGAGAGCTTACCTGAGCCTGCTTCGTCTGATGAGGAATCGCAGAAGTGCTCCACATCCCCATGTTCACAGGACAATATGGACGAGCAGAACGGCCGGGATTATGGCTATCTGGTGCGGCAGAACTCGGAGCTGCTGCGAGCGCTGGAGGAGATGGAGAAATCCTGCGCCGCTCTGAGAGAAGAGAACCGCGTACTGAGAAAGAGCAGTTCTCCAGAGACGGAGGAGAAGGTGAAGAGGCTGAGGAAGAAAAACGCTGAACTCGCCATCATCGCCAAACGACTGGAGGACAGAGCGCGGAAACTCCAGGAGGCGAACCTCAAAGTGGCCAGCAGTCCGATGGCGGTGCGAGCGGGGCAGTGGAGCAGTATAAGCGGGCGTTTGCTCGTCAGAGAGCCAGAGATCTGGCACAGCACGCAGACACACTCCTGAGAAAAGATAAGCAGATCTCATCACTGTGCAGACAGCTGGAGACGCACACCGGGCAACACAAGGTAAACACACACTGACTTACAGAAGAAACAACAAACTCTCTACATTTTATATAGCTGAAAATGTCAGTTTCATCAATGCATCGTGATTCTTTCTCTGGTG
>TCONS_00059888
ATGCATGACTTGTGTACTAGGCCGGACCCATCTGAACCACCGCAGCACGGTTCACCCACACCAGAGATGATTAGTGGTGAACCTGAACCTCCAGCTGGACCCGGGCATCCCGATCGAGGAAAACCAGAGGAGAAAGCACTAAATTCGGATGTTTTGAGTGCGGTGAACATGAGATCCTCCACGACTAATGGAAACAGCAGTGTCATGGTGCCGTCCAATGTTTTGGCTAAGCGGCATCATTCTCTATATGAAGGGCTGAATGGATGCGAGGCAGGGAGATTCGGAAAGAACGGCCGGGATTATGGCTATCTGGTGCGGCAGAACTCGGAGCTGCTGCGAGCGCTGGAGGAGATGGAGAAATCCTGCGCCGCTCTGAGAGAAGAGAACCGCGTACTGAGAAAGAGCAGTTCTCCAGAGACGGAGGAGAAGGTGAAGAGGCTGAGGAAGAAAAACGCTGAACTCGCCATCATCGCCAAACGACTGGAGGACAGAGCGCGGAAACTCCAGGAGGCGAACCTCAAAGTGGCCAGCAGTCCGATGGCGGTGCGAGCGGGGCAGTGGAGCAGTATAAGCGGGCGTTTGCTCGTCAGAGAGCCAGAGATCTGGCACAGCACGCAGACACACTCCTGAGAAAAGATAAGCAGATCTCATCACTGTGCAGACAGCTGGAGACGCACACCGGGCAACACAAGGTAAACACACACTGACTTACAGAAGAAACAACAAACTCTCTACATTTTATATAGCTGAAAATGTCAGTTTCATCAATGCATCGTGATTCTTTCTCTGGTG
>TCONS_00059889
ATGAGAAAAAACTGTGATGTCAATAACCCTCCGGTTCTCTCCTCCAAGAAGGGTCTGAAACGCGGCTCTGGTCCTGATCTGCTTCGGGACGTGGAGCGTCTGCGTGCGAAGCTGGAGGTGGAGCGCAGCAGGACTCAGCAGGCCCACCGCCGCTTCTCCCTGGAGCTCCAGCGGCAGCGTGAGGAGGCGCGCGAGGAGCGAGAGCGAGCGCTGAGAGAAATCACCTTCCGGCTGGAGCAGCAGAAAACACTGGAGCTCCTGCGGCAGAGAGACGCTCTGGGACGAGAGCGAGCTGCGGAGGTGCGTCGTCTGCTGCGCTGGCGGAGTCAATCCACGCTCAGACCAACCAGAGACGTCCATCGCCAACTGGCGGATGAGCTGGCTGGAGTCTGCAGATCCGCAGCTCTCAGACCCAGCTGTAAAGGGAACGGAGCTGCATATCGTAGACTGGAGGAGCTGCTGAAAACACTGCTGGAACAGGCGGATGGACAGCAGGTCGCTTTGCTTCATCGGCTTCAGCAGGAAGTGGATCTAGAGAAGAGCTACTTCCTGTGCCATCTGCTGGAAGCACACAGTCGGCCAGCACTGCAGAGGAAAGAGGAACGCAAAGAcaaagagtTTGTTGTGGAACAATCCAGGCGAAGGTCAAAGAGTTGTATACAGGTGACGGGAGGAGTCAGAGAAGGAAATCTTGCTTTATTTCGTTCTAATTCGCTATCACAGACATACAAAAGCGAATCTCCTCAACctatgaagaagaagaagaagcagcagGATTCTGAAACTCCAGCAGAAGAAGAGGCGTCTGGAGGAGATGTGGAGAGCTTACCTGAGCCTGCTTCGTCTGATGAGGAATCGCAGAAGTGCTCCACATCCCCATGTTCACAGGACAATATGGACGAGCAGGTaagagtgtgttttttttcttctgcccTGGTGTCCTGTTCAGAGGCTGTATTTTAAGCATTGGTGTTTTATAAAATGTCATTGTTCATTGCTCAGTTTGAGGATGTTTTGCCTTTTCTGCTTGGCTGTAATTGCATTTGGATATTTGTGTTGCTTTTGGAAACTTATGATGGTTTTGGCCTTAGGTTTGTTGGATTATCAAAGCTTGAAATATATCTGTGTTGATCAGTTGGTCAGTGGATTGTCCTGAAATCATTAGCTAACTAAATAGATGTAATCATCATTCTAATCAATTATTGGTTTTAACTATAGATCCGAGTTTTTTCAATTTGTTGAGAAAAAAGTTCTTAAAGTATTCTCTTCTGCCCACCAAGAGGTCTGCGCAGGACTGTTTTTTagtcccgctcccgccaggttttattcCGCACCAGTCTTCTTCCACTGTATGTTCAGTCTTTGTTCACTCTTTGCCCGCTTAACTaccattcaagagttcacacttagctgatgatgaATCATGAAGCTTGTTTTGCATGCcgtcccggaagagagccctgagctcataagttcttcgagcctggggctccctcctgtttgcaagacgagaggggagtttgagctcaggtattttatttcacttattttgagctgaaacttcacacaaacacactctagggacatcagagacttattttacacctTGTATAAAGTGGTATAGTAGGCTCCCTTTAACGTCCAGAAAATGTATACCTCTCGTTTTATTGTGTAATGTGAACCTTAAGGAGAGAGTGAATGAAAGAGACAAACAGAGCCCCTGCTGTGCTGAAACTGAGATATGAATAATGCAGAAGTACTGAACAAAACCCAGCGAAAAGCGTCTCCCCACTGAACCCGTCTCAATGTTTTGATCATTCGGTCCCTGAAATGATGAATTTAGTGCCCTGAAATAGAGGCTTAACGTTGAGCTTtgcattgtgttcatgtgctttgCAATGGCTCTTATGACGTTAAAGCTGTGGATTATGGGGTTGTGTTCTTTCTGGATCTGATTGTGTTTAGTTGAAGTTTTGATGTGGTTTGCTTGATCACACACACAAGCTACAAAACTATGATTCAGCTCaatgtattaattatataatgGTATTATAGCACTCAAGAACGtcgagttatttatttaacccaatggttgagtttaACATATTCTgtgctttgttgggttgttttaacctttattgggttatttatttaataactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataaatacacacaaacatgcaaacatacatacatacatacatgtacatgaccatgtgtgtgtgcatgagtaggtatgtgtgtgtgtgtgtgtgtgtgtgtcaatgtttatgtgtgtgtgtgtgtgtgtataaatacacacatacatgcaaacatacatacatccatacatgtACATGACCATGTATGTGTGCAtgagtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0051020 GTPase binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117282

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059887 False 1410 lncRNA 0.55 5 3311008 3363145
TCONS_00059888 False 792 lncRNA 0.53 4 3311008 3430355
TCONS_00059889 True 2489 lncRNA 0.45 2 3358098 3363145

Neighbor

gene id symbol gene type direction distance location
XLOC_030760 CABZ01076744.1 coding downstream 44891 3258123 ~ 3266117 (-)
XLOC_030759 CABZ01076737.1 coding downstream 101663 3184755 ~ 3209345 (-)
XLOC_030758 NA coding downstream 141983 3167199 ~ 3169025 (-)
XLOC_030757 hsf5 coding downstream 192662 3094981 ~ 3118346 (-)
XLOC_030756 NA coding downstream 221545 3087231 ~ 3089463 (-)
XLOC_030763 NA coding upstream 43510 3473865 ~ 3501835 (-)
XLOC_030764 NA coding upstream 123245 3553600 ~ 3554809 (-)
XLOC_030765 hspb1 coding upstream 137661 3568016 ~ 3584815 (-)
XLOC_030766 si:zfos-375h5.1 coding upstream 181143 3611498 ~ 3627110 (-)
XLOC_030767 FO704648.2 coding upstream 230303 3660658 ~ 3670238 (-)
XLOC_030755 FQ323163.1 non-coding downstream 535536 2772289 ~ 2775472 (-)
XLOC_030748 CR931815.1 non-coding downstream 1098220 2212672 ~ 2212788 (-)
XLOC_030772 CU655870.1 non-coding upstream 505562 3935917 ~ 3936596 (-)
XLOC_030782 NA non-coding upstream 1191075 4621430 ~ 4622063 (-)

Expression


Co-expression Network