XLOC_030772 (CU655870.1)


Basic Information

Item Value
gene id XLOC_030772
gene name CU655870.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 3935917 ~ 3936596 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059902
ttgtttttttttaaagatttatttttggcttttttgcctttattattagataggacagtattgagacaggaagcgaagtgggagagagagagaggggggtagggaaatgttgTTGAGacgggattcgaactcgcgacgccctgacgtgctattgcaccatatgtc

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043167 ion binding molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000101035

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059902 True 165 lncRNA 0.42 2 3935917 3936596

Neighbor

gene id symbol gene type direction distance location
XLOC_030771 c1qbp coding downstream 8154 3914403 ~ 3927763 (-)
XLOC_030770 mlxipl coding downstream 46870 3862586 ~ 3889047 (-)
XLOC_030769 mlxipl coding downstream 96632 3819190 ~ 3839285 (-)
XLOC_030768 FO704648.1 coding downstream 251515 3683053 ~ 3684402 (-)
XLOC_030767 FO704648.2 coding downstream 265679 3660658 ~ 3670238 (-)
XLOC_030773 myo19 coding upstream 6561 3943157 ~ 3991655 (-)
XLOC_030774 si:ch211-283g2.1 coding upstream 214218 4150814 ~ 4204601 (-)
XLOC_030775 si:ch211-283g2.2 coding upstream 272567 4209163 ~ 4219741 (-)
XLOC_030776 si:ch211-283g2.2 coding upstream 286919 4223515 ~ 4230370 (-)
XLOC_030777 si:ch211-283g2.3 coding upstream 295600 4232196 ~ 4245186 (-)
XLOC_030764 NA non-coding downstream 381108 3553600 ~ 3554809 (-)
XLOC_030763 NA non-coding downstream 434082 3473865 ~ 3501835 (-)
XLOC_030761 CABZ01084961.1 non-coding downstream 505562 3311008 ~ 3430355 (-)
XLOC_030782 NA non-coding upstream 684834 4621430 ~ 4622063 (-)
XLOC_030783 FO834903.1 non-coding upstream 703863 4640459 ~ 4643289 (-)
XLOC_030784 NA non-coding upstream 733675 4670271 ~ 4673865 (-)
XLOC_030785 CU915770.1 non-coding upstream 749079 4685675 ~ 4697367 (-)
XLOC_030786 CU915770.2 non-coding upstream 778136 4714732 ~ 4734142 (-)
XLOC_030762 NA non-coding downstream 581350 3352108 ~ 3354567 (-)

Expression


Co-expression Network