XLOC_030774 (si:ch211-283g2.1)


Basic Information

Item Value
gene id XLOC_030774
gene name si:ch211-283g2.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 4150814 ~ 4204601 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059905
ACTACTGCACATACCTGAAGGATGGCGGCGAAAGAGGAAGCCGGCAGACCCACATGGAGCAGGCAGATCGAGTTTACGCTGGCCGGCATCGGCTGTGCTGTGGGACTGGGCAACATCTGGAGGTTTCCATACCTGTGTTACAGAAGCGGAGGAGGTGCGTTTCTGTTGCCGTACCTGCTGATGCTGGTGGTGCTGGGGATCCCACTGCTTCACATGGAGCTCACTCTGGGCCAGTATCTGAGAAGAGGGCCCGTCCTGGCCCTGGCCAAAGCCTGTCCACTGTTCAAAGGTGTTGGCATGGCAACGGTGGCCATCTCTTTCATCATGTGCACATACTATAATATAATCATCACGTGGGCCCTCTACTACATGTTCAGCTCTTTTCGGAGTGAGTTGCTTTGGCAAAACTGCAACAACACGTGGAACACGGTGAACTGCACCGACCAAGTGACCAACAGCTCCTCGTCCTCCACCGCCAGCCAGCAGTTCTTCAACTATAAGGTGCTGGAGAGAACCAGTGGTGTGGAGGAGACGGGCACCTTGAGGTGGGAGCTCTTCCTCCTGCTGCTGCTGGCCTGGATCCTTGTCTACCTCTGTATCTTTAAAGGAGTCAAATCCACTGGGAAGGTTGTATATTTCACTGCTCTGTTTCCATACGTGATTCTTCTGGCTCTGCTGATCAATAACGTGCAGCTGCCGGGAGCTTTAGACGGCATCAAATTCTTCATCATACCCGAGTGGGACAAGCTGCTCAACGTGCAGgtATGGATTAATGCAGCAGCTCAAATCTTTAACTCCATTGGGATTGGCTTTGGCTCGCTCATGGCGATGGCCAGCTACAACAACTACAATAACAATGTCCTCAAAGACACTCTGGCCATCGCCATCACAAACTCCCTGACTAGTATTTTCGCTGGATTTGTCATTTTTTCTGCGTTTGGCTACATGTCGCACCTTCAGAATGTGCCGGTCAGTGAAATCGCAGTTGACGCTGTGTCTCTGGATTTTTCTCCGGCAGGTCCGGGTTTAGTGCTTGTGGTTTACCCACAAGCCTTTGTGACGATGCCTGTTGCTCCTCTTTGGgcctttctcttctttttcatgcTACTCTGCCTCGGCCTCGACAGTCAGTTCGCTATGGTGGAGGTGATGGTGACCAGTCTGCTGGACAGTTACAGTAAACCCATACTGAAGCACCTCAAACGCAAGGAGTTTCTTGTGCTTTTAGTTTGTGGTGCGGCGTTTCTTTTGGGTATCCCTAATGTCATGCAGGTTGGGATCTATGTGTTCCAGCTGATGGATCATTACACAGCCATCGTCTCCATCATGTTCCTGGCCTTCTTTGAGGTGGTTGGTGTTTGCTGGTGTTATGGTGTCAAGCGGCTGTCCAGTAATTTAGTAGAGATGACAGGAAAGAGACCCAGCATTTTCTTCAGGATCTGCTGGTGGGTCATTTGTCCTGCGTTGATAACCGTGATCCTAGTGTTCTCAGTCATTCAGTTCAAACCAGCGCGGTATGAGGATTATGTGTACCCACCGTGGGCTCAGGGTGTTGGCTGGCTCATCGCCCTGGCGTCCATCATCTGGATTCCCCTAGCAGCAGTGCACACGCTCTGGGTTCTGCCCGGATCCTTCACTGAGAAGTTTAAAAAGTCCATCACACCATTTTCTCTGGATGAGGATGATAGCCCATATTACCAGCAGAAAGGTGGAATTATGGAGACGATTCCCAACATCGCTGTCATCAGTCCGATTGCACCGCTGCCTGATAAACCAATCCAGACTAATTTATGATCTGctaatgaatcactgaacaagACTGCTGGACACCAGAACTGCTTGAGGTTTATTCAGTGGACAAGTCTGAAAtgttgagaggggtctggatgcagacctggtgcagtgcaattttggttgcatccaatgctttttaatgtgctcacctaaccccacccctcacagtgattTCACTAGCTTcattgcattgtgtctgacattgcatggctgagtgatgcaatctcagcttgcatcataaaagctgcatccagatactattgattgGCCTAAATTCTAGTTTTAATAAGTATAGCTATCTTTAGGATCATCTCAGTTATAATAAGCACAACCAATTTGGgggtttaaaggggtagttcacccaaaaatgaaaatcctgtcatcatttgctcactctTCACTAGTGCCAATCCTgttcaagtttctttcttctgttaaacacaaaggaagatacagtattttgaagaaagctttaTCCATTGACCTTCCTAGTTTttgttgttcctactatggaagtcaatagctctgtttccatccaaaaatgcagaTTAACTTTGttcaaaactggattatcgcataaaagacgtacaaataaagcagcgtttctatccaaccagtcaaagcgaacaaaattgtcacttcctgattaactggcgccaaatatcaacattaaaaacagaatttgctacGATAAGAGAAGCTgcttgaatcttttcttcatttactaAACggcttgtgcctcagaagacaatcctgaccaTAATTTTAATGGGATT
>TCONS_00059906
ATGGCGGCGAAAGAGGAAGCCGGCAGACCCACATGGAGCAGGCAGATCGAGTTTACGCTGGCCGGCATCGGCTGTGCTGTGGGACTGGGCAACATCTGGAGGTTTCCATACCTGTGTTACAGAAGCGGAGGAGGTGCGTTTCTGTTGCCGTACCTGCTGATGCTGGTGGTGCTGGGGATCCCACTGCTTCACATGGAGCTCACTCTGGGCCAGTATCTGAGAAGAGGGCCCGTCCTGGCCCTGGCCAAAGCCTGTCCACTGTTCAAAGGTGTTGGCATGGCAACGGTGGCCATCTCTTTCATCATGTGCACATACTATAATATAATCATCACGTGGGCCCTCTACTACATGTTCAGCTCTTTTCGGAGTGAGTTGCTTTGGCAAAACTGCAACAACACGTGGAACACGGTGAACTGCACCGACCAAGTGACCAACAGCTCCTCGTCCTCCACCGCCAGCCAGCAGTTCTTCAACTATAAGGTGCTGGAGAGAACCAGTGGTGTGGAGGAGACGGGCACCTTGAGGTGGGAGCTCTTCCTCCTGCTGCTGCTGGCCTGGATCCTTGTCTACCTCTGTATCTTTAAAGGAGTCAAATCCACTGGGAAGGTTGTATATTTCACTGCTCTGTTTCCATACGTGATTCTTCTGGCTCTGCTGATCAATAACGTGCAGCTGCCGGGAGCTTTAGACGGCATCAAATTCTTCATCATACCCGAGTGGGACAAGCTGCTCAACGTGCAGgtATGGATTAATGCAGCAGCTCAAATCTTTAACTCCATTGGGATTGGCTTTGGCTCGCTCATGGCGATGGCCAGCTACAACAACTACAATAACAATGTCCTCAAAGACACTCTGGCCATCGCCATCACAAACTCCCTGACTAGTATTTTCGCTGGATTTGTCATTTTTTCTGCGTTTGGCTACATGTCGCACCTTCAGAATGTGCCGGTCAGTGAAATCGCAGTTGACGGTCCGGGTTTAGTGCTTGTGGTTTACCCACAAGCCTTTGTGACGATGCCTGTTGCTCCTCTTTGGgcctttctcttctttttcatgcTACTCTGCCTCGGCCTCGACAGTCAGTTCGCTATGGTGGAGGTGATGGTGACCAGTCTGCTGGACAGTTACAGTAAACCCATACTGAAGCACCTCAAACGCAAGGAGTTTCTTGTGCTTTTAGTTTGTGGTGCGGCGTTTCTTTTGGGTATCCCTAATGTCATGCAGGTTGGGATCTATGTGTTCCAGCTGATGGATCATTACACAGCCATCGTCTCCATCATGTTCCTGGCCTTCTTTGAGGTGGTTGGTGTTTGCTGGTGTTATGGTGTCAAGCGGCTGTCCAGTAATTTAGTAGAGATGACAGGAAAGAGACCCAGCATTTTCTTCAGGATCTGCTGGTGGGTCATTTGTCCTGCGTTGATAACCGTGATCCTAGTGTTCTCAGTCATTCAGTTCAAACCAGCGCGGTATGAGGATTATGTGTACCCACCGTGGGCTCAGGGTGTTGGCTGGCTCATCGCCCTGGCGTCCATCATCTGGATTCCCCTAGCAGCAGTGCACACGCTCTGGGTTCTGCCCGGATCCTTCACTGAGAAGTTTAAAAAGTCCATCACACCATTTTCTCTGGATGAGGATGATAGCCCATATTACCAGCAGAAAGGTGGAATTATGGAGACGATTCCCAACATCGCTGTCATCAGTCCGATTGCACCGCTGCCTGATAAACCAATCCAGACTAATTTATGA

Function

symbol description
si:ch211-283g2.1 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-57 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000046091

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059905 False 2570 mRNA 0.47 13 4150814 4204601
TCONS_00059906 True 1746 mRNA 0.51 13 4151590 4204580

Neighbor

gene id symbol gene type direction distance location
XLOC_030773 myo19 coding downstream 159159 3943157 ~ 3991655 (-)
XLOC_030772 CU655870.1 coding downstream 214218 3935917 ~ 3936596 (-)
XLOC_030771 c1qbp coding downstream 223051 3914403 ~ 3927763 (-)
XLOC_030770 mlxipl coding downstream 261767 3862586 ~ 3889047 (-)
XLOC_030769 mlxipl coding downstream 311529 3819190 ~ 3839285 (-)
XLOC_030775 si:ch211-283g2.2 coding upstream 4562 4209163 ~ 4219741 (-)
XLOC_030776 si:ch211-283g2.2 coding upstream 18914 4223515 ~ 4230370 (-)
XLOC_030777 si:ch211-283g2.3 coding upstream 27595 4232196 ~ 4245186 (-)
XLOC_030778 srrt coding upstream 49328 4253929 ~ 4297459 (-)
XLOC_030779 apooa coding upstream 177777 4382378 ~ 4418555 (-)
XLOC_030767 FO704648.2 non-coding downstream 480576 3660658 ~ 3670238 (-)
XLOC_030764 NA non-coding downstream 596005 3553600 ~ 3554809 (-)
XLOC_030763 NA non-coding downstream 648979 3473865 ~ 3501835 (-)
XLOC_030762 NA non-coding downstream 796247 3352108 ~ 3354567 (-)
XLOC_030782 NA non-coding upstream 416829 4621430 ~ 4622063 (-)
XLOC_030783 FO834903.1 non-coding upstream 435858 4640459 ~ 4643289 (-)
XLOC_030784 NA non-coding upstream 465670 4670271 ~ 4673865 (-)
XLOC_030785 CU915770.1 non-coding upstream 481074 4685675 ~ 4697367 (-)
XLOC_030786 CU915770.2 non-coding upstream 510131 4714732 ~ 4734142 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01105206_00000201_00007982 NA coding CI01105206 null 201 ~ 8017 (+)