XLOC_030776 (si:ch211-283g2.2)


Basic Information

Item Value
gene id XLOC_030776
gene name si:ch211-283g2.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 4223515 ~ 4230370 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059909
TATATCTGTGATCGTTTAACcatcaaatatttgttttaagtcAGCAACCAGGACCAGAAGCGGgctgaaattaaaaatacattagagAGTCTGCAATCATCTGTTACTTCTCTACAGTCTGACCTGCAAAGCAAGCAATCTGACTTTGATTCTCTGTCAAGCTCAATGATTGAAATGAAGAGTTCAGTATCAGATCTCACTTCATCAGTCACAGCCCTTTCCTCTAAACTATCAGCCACCAAGCAGGACGTGTCTCAAACTACTGAAGTGAAGAGTTTGATCAACAGTTTGAGTTCTGCAGTATCAGC
>TCONS_00059910
AAAGGGATGTGTTCTTCTGGATCTTCACTAGGAAGTAAGCAACTGCATAGGGTGCACTCATGATGCAATATGAGAAAAATGGTAGCTCTGAAAACATCATGGAAATGGACTTGGAATCTGAAGAGAAGATGTCCTTTCGCAAAGGTCATCAATACAGGAGAAAAAACAGCATCCTTGTGTTTCTCGCAGCAGTCTGCGTGTTTATTTTCATGGTCATGACTTTGGTCAACTtgctgcATCAGCAAAGAAAGTTTTCAGAGCTGGAGAGTTGGATATACAGCCATACTTCTAATATAACTTCAATCAGCTCACATTTACAGACAACTGATGAAAAAGAGATGTTTAATATTCAGGCCTGGATGACCAATCTTACCTCTTCATTGAGTTCAATCACATCCAAGCAGAAGGAAAACCTACAGAAGATGGAGCGCCAGCAGGATCTGACAAACGCTGAAGTGAAGAGCTTGAGTTCTGCAGTATCAGCGCTCGCATCCAAAATCGATGCATCAGtcAGCAACCAGGACCAGAAGCGGgctgaaattaaaaatacattagagAGTCTGCAATCATCTGTTACTTCTCTACAGTCTGACCTGCAAAGCAAGCAATCTGACTTTGATTCTCTGTCAAGCTCAATGATTGAAATGAAGAGTTCAGTATCAGATCTCACTTCATCAGTCACAGCCCTTTCCTCTAAACTATCAGCCACCAAGCAGGACGTGTCTCAAACTACTGAAGTGAAGAGTTTGATCAACAGTTTGAGTTCTGCAGTATCAGC

Function

symbol description
si:ch211-283g2.2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-151 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000108340

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059909 False 308 processed_transcript 0.40 3 4223515 4226620
TCONS_00059910 True 778 mRNA 0.42 8 4223515 4230370

Neighbor

gene id symbol gene type direction distance location
XLOC_030775 si:ch211-283g2.2 coding downstream 3774 4209163 ~ 4219741 (-)
XLOC_030774 si:ch211-283g2.1 coding downstream 18914 4150814 ~ 4204601 (-)
XLOC_030773 myo19 coding downstream 231860 3943157 ~ 3991655 (-)
XLOC_030772 CU655870.1 coding downstream 286919 3935917 ~ 3936596 (-)
XLOC_030771 c1qbp coding downstream 295752 3914403 ~ 3927763 (-)
XLOC_030777 si:ch211-283g2.3 coding upstream 1826 4232196 ~ 4245186 (-)
XLOC_030778 srrt coding upstream 23559 4253929 ~ 4297459 (-)
XLOC_030779 apooa coding upstream 152008 4382378 ~ 4418555 (-)
XLOC_030780 zgc:153704 coding upstream 252067 4482437 ~ 4493502 (-)
XLOC_030781 cst14b.1 coding upstream 293263 4523633 ~ 4532516 (-)
XLOC_030767 FO704648.2 non-coding downstream 553277 3660658 ~ 3670238 (-)
XLOC_030764 NA non-coding downstream 668706 3553600 ~ 3554809 (-)
XLOC_030763 NA non-coding downstream 721680 3473865 ~ 3501835 (-)
XLOC_030762 NA non-coding downstream 868948 3352108 ~ 3354567 (-)
XLOC_030782 NA non-coding upstream 391060 4621430 ~ 4622063 (-)
XLOC_030783 FO834903.1 non-coding upstream 410089 4640459 ~ 4643289 (-)
XLOC_030784 NA non-coding upstream 439901 4670271 ~ 4673865 (-)
XLOC_030785 CU915770.1 non-coding upstream 455305 4685675 ~ 4697367 (-)
XLOC_030786 CU915770.2 non-coding upstream 484362 4714732 ~ 4734142 (-)

Expression


Co-expression Network