XLOC_030780 (zgc:153704)


Basic Information

Item Value
gene id XLOC_030780
gene name zgc:153704
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 4482437 ~ 4493502 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059915
atgatgaagatgatgatgatggtgaacGGTGTGTTTGCTCTGCTCTTCGTCCTGCTCTCTGCTCTCTCCGTCAGCGCGGAGGTTCTGCCGCCCGCAGACTTCGACATCAAGGGGATGACAGGGAAATGGCACCTGATCGGGTTTGCGACCAACGCTGAGTGGTTCGTCAGCCGTAAGGCCAACATGAAGATGGGCATCGCCATGGTGACGCCAACTGAGGAAGGAGACCTGGACATGGCATACTCCAGTCTCAaTCCTGATGGCACATGCTGGAGAATGAACTATCTGGCTCAGAAGACCGATATTCCTGGAAAATTCAGCTTCCACACTGAACGCTCTGGAACTGACAATGACATGCGCATTGCTGATGTGAAGTATGATGAATTTGCTTTGATTCACACCATCAAGATGAAGGACGGCTCCAGCACACTGCTCAACAAACTCTACGGCCGAACAACAGACCTAAGTCAGGACGTCCTGGATAAATTCACAGAATTCTCTCTTGAGCAAGGGATTCTGCCTGAAAACATTGCCATCCTTCCTAAAAATGACGAGTGTCCTTGATGTGCTGATCTGAAGATCTTCTGATTGATTATGACTGTAGTGAATCATTTAAAGTGCCTCTCTAGTGTTTTACACTCTTACTATCAGTCCTATTACCCTCTGAAAGTTCTTCTTATCATTTCTGACCTCTTCTTCATGGGTTTGGACCAATAAACTCTTTTGTGAATCTCTGTTATGAGGTGTTTGTGTTGTGATCCAATTCTGTTTAatcttccattaaaataggcatCCCTTAGTTTCACAAGCTTCACTTTTGACTTAAGCATTTTGATCTATATCCCGCTCCAAACACATACAGCTGAAGAGAAATGTGTTATCCCTCCTGTTAAATGCAAATCCTTCC

Function

symbol description
zgc:153704 Predicted to enable small molecule binding activity. Orthologous to human LCN15 (lipocalin 15).

GO:

id name namespace
GO:0036094 small molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1114 Predicted to enable small molecule binding activity. Orthologous to human LCN15 (lipocalin 15).

Ensembl:

ensembl_id ENSDARG00000045979

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059915 True 907 mRNA 0.45 6 4482437 4493502

Neighbor

gene id symbol gene type direction distance location
XLOC_030779 apooa coding downstream 63882 4382378 ~ 4418555 (-)
XLOC_030778 srrt coding downstream 184978 4253929 ~ 4297459 (-)
XLOC_030777 si:ch211-283g2.3 coding downstream 237251 4232196 ~ 4245186 (-)
XLOC_030776 si:ch211-283g2.2 coding downstream 252067 4223515 ~ 4230370 (-)
XLOC_030775 si:ch211-283g2.2 coding downstream 262696 4209163 ~ 4219741 (-)
XLOC_030781 cst14b.1 coding upstream 30131 4523633 ~ 4532516 (-)
XLOC_030782 NA coding upstream 127928 4621430 ~ 4622063 (-)
XLOC_030783 FO834903.1 coding upstream 146957 4640459 ~ 4643289 (-)
XLOC_030784 NA coding upstream 176769 4670271 ~ 4673865 (-)
XLOC_030785 CU915770.1 coding upstream 192173 4685675 ~ 4697367 (-)
XLOC_030772 CU655870.1 non-coding downstream 545841 3935917 ~ 3936596 (-)
XLOC_030767 FO704648.2 non-coding downstream 812199 3660658 ~ 3670238 (-)
XLOC_030764 NA non-coding downstream 927628 3553600 ~ 3554809 (-)
XLOC_030763 NA non-coding downstream 980602 3473865 ~ 3501835 (-)
XLOC_030762 NA non-coding downstream 1127870 3352108 ~ 3354567 (-)
XLOC_030786 CU915770.2 non-coding upstream 221230 4714732 ~ 4734142 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000171_00871295_00874260 NA coding CI01000171 null 871053 ~ 874312 (-)