RNA id: TCONS_00059906


Basic Information

Item Value
RNA id TCONS_00059906
length 1746
RNA type mRNA
GC content 0.51
exon number 13
gene id XLOC_030774
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 4150814 ~ 4204601 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGCGAAAGAGGAAGCCGGCAGACCCACATGGAGCAGGCAGATCGAGTTTACGCTGGCCGGCATCGGCTGTGCTGTGGGACTGGGCAACATCTGGAGGTTTCCATACCTGTGTTACAGAAGCGGAGGAGGTGCGTTTCTGTTGCCGTACCTGCTGATGCTGGTGGTGCTGGGGATCCCACTGCTTCACATGGAGCTCACTCTGGGCCAGTATCTGAGAAGAGGGCCCGTCCTGGCCCTGGCCAAAGCCTGTCCACTGTTCAAAGGTGTTGGCATGGCAACGGTGGCCATCTCTTTCATCATGTGCACATACTATAATATAATCATCACGTGGGCCCTCTACTACATGTTCAGCTCTTTTCGGAGTGAGTTGCTTTGGCAAAACTGCAACAACACGTGGAACACGGTGAACTGCACCGACCAAGTGACCAACAGCTCCTCGTCCTCCACCGCCAGCCAGCAGTTCTTCAACTATAAGGTGCTGGAGAGAACCAGTGGTGTGGAGGAGACGGGCACCTTGAGGTGGGAGCTCTTCCTCCTGCTGCTGCTGGCCTGGATCCTTGTCTACCTCTGTATCTTTAAAGGAGTCAAATCCACTGGGAAGGTTGTATATTTCACTGCTCTGTTTCCATACGTGATTCTTCTGGCTCTGCTGATCAATAACGTGCAGCTGCCGGGAGCTTTAGACGGCATCAAATTCTTCATCATACCCGAGTGGGACAAGCTGCTCAACGTGCAGgtATGGATTAATGCAGCAGCTCAAATCTTTAACTCCATTGGGATTGGCTTTGGCTCGCTCATGGCGATGGCCAGCTACAACAACTACAATAACAATGTCCTCAAAGACACTCTGGCCATCGCCATCACAAACTCCCTGACTAGTATTTTCGCTGGATTTGTCATTTTTTCTGCGTTTGGCTACATGTCGCACCTTCAGAATGTGCCGGTCAGTGAAATCGCAGTTGACGGTCCGGGTTTAGTGCTTGTGGTTTACCCACAAGCCTTTGTGACGATGCCTGTTGCTCCTCTTTGGgcctttctcttctttttcatgcTACTCTGCCTCGGCCTCGACAGTCAGTTCGCTATGGTGGAGGTGATGGTGACCAGTCTGCTGGACAGTTACAGTAAACCCATACTGAAGCACCTCAAACGCAAGGAGTTTCTTGTGCTTTTAGTTTGTGGTGCGGCGTTTCTTTTGGGTATCCCTAATGTCATGCAGGTTGGGATCTATGTGTTCCAGCTGATGGATCATTACACAGCCATCGTCTCCATCATGTTCCTGGCCTTCTTTGAGGTGGTTGGTGTTTGCTGGTGTTATGGTGTCAAGCGGCTGTCCAGTAATTTAGTAGAGATGACAGGAAAGAGACCCAGCATTTTCTTCAGGATCTGCTGGTGGGTCATTTGTCCTGCGTTGATAACCGTGATCCTAGTGTTCTCAGTCATTCAGTTCAAACCAGCGCGGTATGAGGATTATGTGTACCCACCGTGGGCTCAGGGTGTTGGCTGGCTCATCGCCCTGGCGTCCATCATCTGGATTCCCCTAGCAGCAGTGCACACGCTCTGGGTTCTGCCCGGATCCTTCACTGAGAAGTTTAAAAAGTCCATCACACCATTTTCTCTGGATGAGGATGATAGCCCATATTACCAGCAGAAAGGTGGAATTATGGAGACGATTCCCAACATCGCTGTCATCAGTCCGATTGCACCGCTGCCTGATAAACCAATCCAGACTAATTTATGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-57 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000049197

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059902 lncRNA downstream 214994 3935917 ~ 3936596 (-) True XLOC_030772
TCONS_00059901 lncRNA downstream 223895 3922885 ~ 3927695 (-) True XLOC_030771
TCONS_00059894 lncRNA downstream 481352 3660658 ~ 3670238 (-) True XLOC_030767
TCONS_00059891 lncRNA downstream 582152 3568199 ~ 3569438 (-) False XLOC_030765
TCONS_00061920 lncRNA downstream 596781 3553600 ~ 3554809 (-) True XLOC_030764
TCONS_00061921 lncRNA upstream 416850 4621430 ~ 4622003 (-) False XLOC_030782
TCONS_00061922 lncRNA upstream 416850 4621430 ~ 4622063 (-) True XLOC_030782
TCONS_00059918 lncRNA upstream 435879 4640459 ~ 4643289 (-) False XLOC_030783
TCONS_00059917 lncRNA upstream 435879 4640459 ~ 4643289 (-) True XLOC_030783
TCONS_00061923 lncRNA upstream 465691 4670271 ~ 4673865 (-) True XLOC_030784
TCONS_00059904 mRNA downstream 159935 3954614 ~ 3991655 (-) True XLOC_030773
TCONS_00059903 mRNA downstream 191429 3943157 ~ 3960161 (-) False XLOC_030773
TCONS_00059899 mRNA downstream 223827 3914403 ~ 3927763 (-) False XLOC_030771
TCONS_00059900 mRNA downstream 223898 3914522 ~ 3927692 (-) False XLOC_030771
TCONS_00059898 mRNA downstream 262543 3864632 ~ 3889047 (-) True XLOC_030770
TCONS_00059907 mRNA upstream 4583 4209163 ~ 4216324 (-) False XLOC_030775
TCONS_00059908 mRNA upstream 4998 4209578 ~ 4219741 (-) True XLOC_030775
TCONS_00059910 mRNA upstream 18935 4223515 ~ 4230370 (-) True XLOC_030776
TCONS_00059911 mRNA upstream 27616 4232196 ~ 4239765 (-) False XLOC_030777
TCONS_00059912 mRNA upstream 30933 4235513 ~ 4245186 (-) True XLOC_030777
TCONS_00059873 other downstream 1938802 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 2189181 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 2191390 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059866 other downstream 2198812 1952652 ~ 1952778 (-) True XLOC_030742
TCONS_00059864 other downstream 2314330 1837149 ~ 1837260 (-) True XLOC_030739
TCONS_00059909 other upstream 18935 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059924 other upstream 738018 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059943 other upstream 2326487 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 2724454 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 2943711 7148291 ~ 7148407 (-) True XLOC_030811

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01105206_00000201_00007982.mRNA True 1135 mRNA 0.51 8 CI01105206 201 ~ 8017 (+)