RNA id: TCONS_00059908


Basic Information

Item Value
RNA id TCONS_00059908
length 749
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_030775
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 4209163 ~ 4219741 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTTGAGCTCTGCAGTATCAGCGCTGACGTCCAAACTCAGTGAAACAGatTCTCTATCGAGCTCACTGAATGAACTGAAGAGTTCAGTGTCAGACCTCTCTTCATCCATCGCAGCTCTTTCCTCAAAACAACAGAGCTCTGaagAGAGAATCCTGAATGCTCTGAAGGGGCTGATGTCCAATACGAGTGCCAAAACAGCTGATGTTCCTGTGAAAAGCTGTAAATCTGGCTGGATTGTGTATAAAAGcagctgtttctttttttctgaaactCAAGTCAGCTGGTCTGAAGCCCGAGATTACTGCAAACAACAGGAAGCGTCACTCCTGAAAATACAAGATGACAATGAGGAGTGGTCATTTCTGAAAAATCACACCATCCCCAAACACTACTGGGTCGGCCTCACAGATCAGAACACAGGCCAGTGGAGATGGGTTGATGAAACTCCTTACAGCATCAACAAAGAACGCTGGAATCAAGGCCAGCCGGATGACTGGAAAAACCACGGTCTGGGAGAAGAAGGAGAGGATTGTGGGCATATATCATATACTGGGAAACTCAATGACATCCACTGCTCCACCAAAATTAGATTTATTTGTAGAAACTGAAAATGACTGATGAATGTGACCCAAATAACAAAGACATACAAATCGTCTGTATCCTAGTACTCTAAACATTGTAAACACCCTTCAAAACATGTGTATTTCCTCCTTTAATATtcattaaacaataaatacacatttcacaA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-151 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000100093

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059902 lncRNA downstream 272982 3935917 ~ 3936596 (-) True XLOC_030772
TCONS_00059901 lncRNA downstream 281883 3922885 ~ 3927695 (-) True XLOC_030771
TCONS_00059894 lncRNA downstream 539340 3660658 ~ 3670238 (-) True XLOC_030767
TCONS_00059891 lncRNA downstream 640140 3568199 ~ 3569438 (-) False XLOC_030765
TCONS_00061920 lncRNA downstream 654769 3553600 ~ 3554809 (-) True XLOC_030764
TCONS_00061921 lncRNA upstream 401689 4621430 ~ 4622003 (-) False XLOC_030782
TCONS_00061922 lncRNA upstream 401689 4621430 ~ 4622063 (-) True XLOC_030782
TCONS_00059918 lncRNA upstream 420718 4640459 ~ 4643289 (-) False XLOC_030783
TCONS_00059917 lncRNA upstream 420718 4640459 ~ 4643289 (-) True XLOC_030783
TCONS_00061923 lncRNA upstream 450530 4670271 ~ 4673865 (-) True XLOC_030784
TCONS_00059905 mRNA downstream 4977 4150814 ~ 4204601 (-) False XLOC_030774
TCONS_00059906 mRNA downstream 4998 4151590 ~ 4204580 (-) True XLOC_030774
TCONS_00059904 mRNA downstream 217923 3954614 ~ 3991655 (-) True XLOC_030773
TCONS_00059903 mRNA downstream 249417 3943157 ~ 3960161 (-) False XLOC_030773
TCONS_00059899 mRNA downstream 281815 3914403 ~ 3927763 (-) False XLOC_030771
TCONS_00059910 mRNA upstream 3774 4223515 ~ 4230370 (-) True XLOC_030776
TCONS_00059911 mRNA upstream 12455 4232196 ~ 4239765 (-) False XLOC_030777
TCONS_00059912 mRNA upstream 15772 4235513 ~ 4245186 (-) True XLOC_030777
TCONS_00059913 mRNA upstream 34188 4253929 ~ 4297459 (-) True XLOC_030778
TCONS_00059914 mRNA upstream 162637 4382378 ~ 4418555 (-) True XLOC_030779
TCONS_00059873 other downstream 1996790 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 2247169 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 2249378 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059866 other downstream 2256800 1952652 ~ 1952778 (-) True XLOC_030742
TCONS_00059864 other downstream 2372318 1837149 ~ 1837260 (-) True XLOC_030739
TCONS_00059909 other upstream 3774 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059924 other upstream 722857 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059943 other upstream 2311326 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 2709293 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 2928550 7148291 ~ 7148407 (-) True XLOC_030811

Expression Profile

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