Gene
RNA
| Item | Value |
|---|---|
| gene id | G84323 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 10348860 ~ 10350255 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU95932 | True | 546 | lncRNA | 0.48 | 5 | 10348860 | 10350255 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_10335904_10336688 | NA | coding | upstream | 11964 | 10335904 ~ 10336896 (+) |
| CI01000013_10261599_10283287 | NA | coding | upstream | 64893 | 10260271 ~ 10283967 (+) |
| CI01000013_09681047_09683275 | LRRC4, LRRC4.2 | coding | upstream | 665427 | 9681047 ~ 9683433 (+) |
| CI01000013_09430170_09443518 | RBM28 | coding | upstream | 904837 | 9430170 ~ 9444023 (+) |
| CI01000013_09279917_09290301 | TSPAN33B | coding | upstream | 1058100 | 9279917 ~ 9290760 (+) |
| CI01000013_10502138_10525511 | GRM3 | coding | downstream | 150435 | 10500690 ~ 10525674 (+) |
| CI01000013_10586449_10594082 | NA | coding | downstream | 235563 | 10585818 ~ 10594442 (+) |
| CI01000013_10756927_10790192 | FRMD4A | coding | downstream | 406672 | 10756927 ~ 10792761 (+) |
| CI01000013_10808688_10819703 | NA | coding | downstream | 458433 | 10808688 ~ 10819925 (+) |
| CI01000013_10821530_10827412 | SEPHS1, SEPHS1.L | coding | downstream | 471275 | 10821530 ~ 10827977 (+) |
| G84304 | NA | non-coding | upstream | 9858 | 10337498 ~ 10339002 (+) |
| G84299 | NA | non-coding | upstream | 61550 | 10286011 ~ 10287310 (+) |
| G84289 | NA | non-coding | upstream | 94601 | 10253174 ~ 10254259 (+) |
| G84265 | NA | non-coding | upstream | 161203 | 10186533 ~ 10187657 (+) |
| G84202 | NA | non-coding | upstream | 221108 | 10123760 ~ 10127752 (+) |
| G84324 | NA | non-coding | downstream | 4428 | 10354683 ~ 10356731 (+) |
| G84325 | NA | non-coding | downstream | 7503 | 10357758 ~ 10380783 (+) |
| G84364 | NA | non-coding | downstream | 112565 | 10462820 ~ 10463073 (+) |
| G84369 | NA | non-coding | downstream | 130200 | 10480455 ~ 10480859 (+) |
| G84353 | NA | non-coding | downstream | 192232 | 10542487 ~ 10545067 (+) |
| G84250 | NA | other | upstream | 132898 | 10215127 ~ 10215962 (+) |
| G84215 | NA | other | upstream | 269524 | 10076454 ~ 10079336 (+) |
| G84194 | NA | other | upstream | 312067 | 10030608 ~ 10036953 (+) |
| G84005 | NA | other | upstream | 746625 | 9601611 ~ 9602235 (+) |
| G82581 | NA | other | upstream | 1013912 | 9329329 ~ 9334948 (+) |
| G84768 | NA | other | downstream | 1819734 | 12169989 ~ 12170818 (+) |
| G84790 | NA | other | downstream | 1834687 | 12184942 ~ 12201975 (+) |
| G84864 | NA | other | downstream | 2014794 | 12365049 ~ 12375905 (+) |
