Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU95932 |
| length | 546 |
| lncRNA type | antisense_over |
| GC content | 0.48 |
| exon number | 5 |
| gene id | G84323 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 10348860 ~ 10350255 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU95913 | lncRNA | upstream | 9858 | 10337498 ~ 10339002 (+) | True | G84304 |
| TU95908 | lncRNA | upstream | 61550 | 10286011 ~ 10287310 (+) | True | G84299 |
| TU95898 | lncRNA | upstream | 94601 | 10253174 ~ 10254259 (+) | True | G84289 |
| TU95874 | lncRNA | upstream | 161203 | 10186533 ~ 10187657 (+) | True | G84265 |
| TU95781 | lncRNA | upstream | 221108 | 10123760 ~ 10127752 (+) | True | G84202 |
| TU95933 | lncRNA | downstream | 4428 | 10354683 ~ 10356731 (+) | True | G84324 |
| TU95934 | lncRNA | downstream | 7503 | 10357758 ~ 10380783 (+) | True | G84325 |
| TU95975 | lncRNA | downstream | 112565 | 10462820 ~ 10463073 (+) | True | G84364 |
| TU95980 | lncRNA | downstream | 130200 | 10480455 ~ 10480859 (+) | True | G84369 |
| TU95964 | lncRNA | downstream | 192232 | 10542487 ~ 10545067 (+) | True | G84353 |
| CI01000013_10335904_10336688.mRNA | mRNA | upstream | 11964 | 10335904 ~ 10336896 (+) | True | CI01000013_10335904_10336688 |
| CI01000013_10261599_10283287.mRNA | mRNA | upstream | 64893 | 10260271 ~ 10283967 (+) | True | CI01000013_10261599_10283287 |
| CI01000013_09681047_09683275.mRNA | mRNA | upstream | 665427 | 9681047 ~ 9683433 (+) | True | CI01000013_09681047_09683275 |
| CI01000013_09430170_09443518.mRNA | mRNA | upstream | 904837 | 9430170 ~ 9444023 (+) | True | CI01000013_09430170_09443518 |
| CI01000013_09279917_09290301.mRNA | mRNA | upstream | 1058100 | 9279917 ~ 9290760 (+) | True | CI01000013_09279917_09290301 |
| CI01000013_10502138_10525511.mRNA | mRNA | downstream | 150435 | 10500690 ~ 10525674 (+) | True | CI01000013_10502138_10525511 |
| CI01000013_10586449_10594082.mRNA | mRNA | downstream | 235563 | 10585818 ~ 10594442 (+) | True | CI01000013_10586449_10594082 |
| CI01000013_10756927_10790192.mRNA | mRNA | downstream | 406672 | 10756927 ~ 10790489 (+) | False | CI01000013_10756927_10790192 |
| CI01000013_10808688_10819703.mRNA | mRNA | downstream | 458433 | 10808688 ~ 10819925 (+) | True | CI01000013_10808688_10819703 |
| CI01000013_10821530_10827412.mRNA | mRNA | downstream | 471275 | 10821530 ~ 10827977 (+) | True | CI01000013_10821530_10827412 |
| TU95833 | other | upstream | 132898 | 10215127 ~ 10215962 (+) | True | G84250 |
| TU95794 | other | upstream | 269524 | 10076454 ~ 10079336 (+) | True | G84215 |
| TU95773 | other | upstream | 312067 | 10030608 ~ 10036793 (+) | False | G84194 |
| TU95556 | other | upstream | 746625 | 9601611 ~ 9602235 (+) | False | G84005 |
| TU96004 | other | downstream | 422031 | 10772286 ~ 10784757 (+) | False | CI01000013_10756927_10790192 |
| TU96453 | other | downstream | 1819734 | 12169989 ~ 12170818 (+) | True | G84768 |
| TU96501 | other | downstream | 1834687 | 12184942 ~ 12201975 (+) | True | G84790 |
| TU96598 | other | downstream | 2014794 | 12365049 ~ 12375905 (+) | True | G84864 |
