RNA id: TU96598



Basic Information


Item Value
RNA id TU96598
length 2507
RNA type TUCP
GC content 0.46
exon number 13
gene id G84864
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 12365049 ~ 12375905 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATATTGCTTATCACATAACACCAACATTAATTTTTAAACATTTTTTTCTTCCAACAACATTTTATCCCAAAAATGTCAGATCATTCTCAATATTCAAGTGAAAGTTCATGTTTTTTTCCCCAATAATTATACATCCTGGTAAGCGTGTTATGTTCAGTGAAGCATGTTGAGTGAAAGTGAAGAAGGAAATAAGTGGGGAAAAAATACAATATGCTCAAAGAATTAGGACAATACCAGCCACACCAAAGGCCACTGTTGTGCAATTATACCTTAAAAACTGTTCATTTACTGCTCTTGTGTGAGATATGCAATCAAAACAGAAAGACTTTAACTGGTATTTTTAACCTGGTTGGATGTAGGTTCTTTGTCTGCCTACTCAAACTGGCCACTAAAGGATCTCAGAAAGTGGACAGTAGTTGCATGCGGTCAACTGATCTTGTTCTTTTGGCATTATATACCAACATCCCCACCACCACCGCAATGGAGACAACAAAGAGTCCTGCAAAGACCCCGGTGCTTGTGCTCATGTGTAGAAATCCACCGTCATTTGAGGCTGCAGAATTATGAGTCTGTCTCGCCACACGTAGGGGACCCTGGGTGACGTAGTGTCTGGCTGTTTCTTGGCTCATGTCTCGCCTACGTCTGCGTGCGGCTTGACCAAGACAGCCTTGGGCACATCTGGAGTTTGGGCTGTCTTTTGCACACAGGATCACGGAGCAACTAATGTACACCTCATCAAAGCCTCCTGTGAACTTGAAAGCTTGGATCTCAAAGTCATATTTTGTGGAGTCACCTGGGTAAACCATGACTGTTTCATCCATAACACACCCATCTTTGATGATGTCATAAAAGACAGGACTGAACGGATTGTCTTCTGGAGTGGCCCTGCAGGACTCAACGAAGAGTGTGACCTCTGGGAGAGCCGTACGGGCTTCAATACCCATGTAGATGGAGTCCATCAGCTGAACCTGCACTGGATACTGGCTGGGATCTACCTGACTGTTAAAGCTGCTGTCGGTGAAAACTTCAAATGAGTAACTAAATGTACCGAAGCTGGATTCAGTGAAGATGTAGTCAGATTTATGGTTGACGTAGCGGTTTGACACACTGGCTATTTTGGGATACTGGCAGGAGAAGCCGAATTTAACTTGATTGCGTCTGGTGATAACAGCATTCGGGTTCTCAAAAGAGTTTATCTCGTTTTTGAAGACCATGAAATCTCCAGAGTCATCCATCGTAGTGCCACAGGTGTTGAGGGACATTGTTCCCAGGATGTGGGTCTGATTGGAGGTAAGAGAGCAGGTGGGGTCTCGCAGTTTTAGCCAGTCCTGGTCAATGCCATCCATGGAGGCTTTACTGACCACAATGCTGATACTGTTATTGTCACAGATGACCTTTGCTTCACCTGATAAAACCCTTGCTTTTGCCACAACCACAATAATGCACCTCATTTCTGACTGACTGTTAAGTGTTTCTGCTGTGAAACACAAAGGTACATGACGATACAGATCCGTCTCCTGTGGAATCCAGGTCAGTGTTGCCATCATAACCCCATTACTTAAACTTGTCAGGGTCTTAGACATATTAGAGGGGCCACTGACCTGGAAGTCAAAGATGCTGTTGTCTGAGACCTGTGCTCGGAGGGTGATCTCATGAGCCTGTCCCACAGCAGCATGATGCACATCTCCATGCAAAGGAGTTGGTGTCAAGAAACTTGGCTTGTTCACACCTGGCACGCAACCCTGGGCTGGTGGAAGAATTTCAACTCCAAACTGCAGAGGCACTTGACTGAGAGCAGTTGGATTACTGTCTGATGCATTACTGACTGAGAGGACCCCATTATCTCCCATCACAGTTATGTTTGAAACAGGATAATCCTCCAGGATGAGCTCAAACACGTGCATACCCAGAGCCAGTGAGTCACCTCTGTGCAAAGTGCATGATTCCTCGTGAAGATGTATGTTTGGATGTTGATTGGTGTCATTAAACCTGCATCTCACAACATCGTCATCTGGGTCATGTGACAGCAACTGAAGGTTCTGGAAGCAATTCTGAGGAATCCTTATGTTTGGAATTGCTGCTGAAACAGGGGATCTGTTTGGAGACTGAGTGTCGGATCGTCGGCCAGTGTCAACATGAGTGCGAAGGGTCCATCCACTGACACCCTGAACATTATCCTCCCAGCAACAACCAGAGGAGCTCAGAATGAAGGGACCATTAGTAGTGACATTGGTGGCCATGTGAACCTCTGATTGGCACCACAGACCTTCAGGTCCGCTGTCTGTCACCATAGCTCCTGTGTTGGTGAGGACGCCACAGGATCCACTCTCACAGATCCAATTGATTTGAGAACCACAGGGACCCCTGCTGGACTCTCTGTAGTAAAACTGCATCTCCACTGATCCATCTGGAAATCTGTTTCCAGGCGTGAACGTTATGGAACCCCCGTAGAAACCTACGGCTGGTCCCACAGCGAGAGTCAAGCTAATCAGCAGCAGCATCGTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU96549 lncRNA upstream 131265 12233246 ~ 12233784 (+) True G84820
TU96467 lncRNA upstream 226939 12137191 ~ 12138110 (+) True G84775
TU96455 lncRNA upstream 233515 12127831 ~ 12131534 (+) False G84769
TU96457 lncRNA upstream 233515 12127831 ~ 12131534 (+) True G84769
TU96425 lncRNA upstream 269590 12047870 ~ 12095459 (+) True G84741
TU96604 lncRNA downstream 984 12376889 ~ 12377247 (+) True G84867
TU96616 lncRNA downstream 43998 12419903 ~ 12420119 (+) True G84879
TU96635 lncRNA downstream 100746 12476651 ~ 12476877 (+) True G84898
TU96636 lncRNA downstream 102348 12478253 ~ 12478528 (+) True G84899
TU96665 lncRNA downstream 146969 12522874 ~ 12524980 (+) True G84919
CI01000013_12314589_12315317.mRNA mRNA upstream 49540 12313175 ~ 12315509 (+) True CI01000013_12314589_12315317
CI01000013_12272623_12275499.mRNA mRNA upstream 89328 12272623 ~ 12275721 (+) True CI01000013_12272623_12275499
CI01000013_12260938_12264631.mRNA mRNA upstream 100418 12260938 ~ 12264631 (+) True CI01000013_12260938_12264631
CI01000013_12099659_12100829.mRNA mRNA upstream 263773 12097363 ~ 12101276 (+) True CI01000013_12099659_12100829
CI01000013_11937264_11960076.mRNA mRNA upstream 404723 11936811 ~ 11960326 (+) True CI01000013_11937264_11960076
CI01000013_12379804_12398839.mRNA mRNA downstream 3616 12379521 ~ 12398839 (+) True CI01000013_12379804_12398839
CI01000013_12459982_12465113.mRNA mRNA downstream 84077 12459982 ~ 12465573 (+) True CI01000013_12459982_12465113
CI01000013_12536762_12549569.mRNA mRNA downstream 160857 12536762 ~ 12550015 (+) True CI01000013_12536762_12549569
TU96501 other upstream 163074 12184942 ~ 12201975 (+) True G84790
TU96453 other upstream 194231 12169989 ~ 12170818 (+) True G84768
TU96004 other upstream 1580292 10772286 ~ 10784757 (+) False CI01000013_10756927_10790192
TU95833 other upstream 2149087 10215127 ~ 10215962 (+) True G84250
TU95794 other upstream 2285713 10076454 ~ 10079336 (+) True G84215

Expression Profile