CI01000013_12099659_12100829 (GCSHA, GCSH)


Basic Information

Item Value
gene id CI01000013_12099659_12100829
gene name GCSHA, GCSH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 12097363 ~ 12101276 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_12099659_12100829.mRNA
CTATAAAAACACATACCTGGGTAGTTTATTTTCTGAGTTTGATTCCTGGCAAATAAATCCTGTCAAAAGTAAAATTATATCAACATAAAATTATGCGTATTTATAAACTTAACAAAGTTCGGCCTGTAAACATTGCATTAGAACAAAAAAACGACTCCGTTTTTAAATAAACCATTGAAGGCTGTAACTACGTAGGAGAGCTGCTCCATCTAATATAGTCTTATAGGGTACTCAAAACTGTAAGATTTTATAAATTGGATTTTATAGGCTTAAGATAGAATTGCATAATACATAATTCAGAGTTTACATAAATGTTATCAAATATAGCAACCTTACCCTACAATTTTTTTACCATGGTAAATACATTTTCTGCTAAAACATCATAGTTACCACATTAATAAATTATTCTGGAATGTCCTTCAAAAAGTGTCTGATACTTTCAGAATCTTTGCTATTTTGGTGAATGCATTATGGCTAAAACATCATTACCACAATTTTACTGTAGTAGGGATAAATAAATAGGGTATTTCAGGAAACTTTAGAAAGGTCACCAATTAATTTAGATGGTTAAAAATTAAAATACTTACCTTGAAGCACAAATAGCTTGAAAATGAAAAGTGTACAGAGTGAAAACAGTTTAATGTCCCGCTTTTCGTTCATCTCAGAGCGACGGACGTCCTTCAACAATCATGAAATGACAAGTTTCATTTTAGGAGGATCGATTGAAATTCTCCGTTGGAAAAAGATTCTTATAGGATTAATCAAGTTAAAATATCTAAGGTACGATTAACAAACTATTGTGATTTGTCCCAGAGTAGTGAAGGATAAACGTCCATCTTCTGTTCAGTCAGAGGAGGAAGATGTACCTGCGCGCACCTGCGGCATCAGGAGGAGGGAGCGCACCTGCGCGCAGGTAAAAGCGCACGAGCACTCATACCTGATGTATGGAATGGCATATAGATCAGGTGATATTCCAGTTGCTGGTGAAGTGACCACAAGTTTACTTTAACTTTACAATGGTTTAGACAGTTCACAGCTCAGTCAACTGAGGTGCATTTATTTATTAGATTTATAGCTTTCATATTTGTATCCTTATCAAATACTGAGGATATTGTCTTGACTAACTGAATCGTAATATAGTTACAATTCGTCGATGTAGCCGTCCGTTACAGATCCTAGCTTTTAAGCAGCCTGTTGCGTTATATCGAGGTCAACGCGACTTCTGTTCGCGAACGTCTACTGTAACCTAATTTTTGTTATTCAAATTTGGGTAACGTTAGTACGAATTGTTAAATGATTATCAAGTGGTCGACATTGTAAGATCATTTCATGCGAGTATAATTTTCGGGGAAAATCTGTTTTGTCTCACGAAACCAAATGTTTTTGACATTACCTAACTCGTAAAGAGTTTACAAAACTTCTACTTGCGACATACATGTCTAAAAAATTAATGTAGGCCTTATGACAGGACTTACATTTTGTCGAACAAGAATCCCAACGCCAACGGAAAGCGCCCACTGTTGCTGTGGTTACTTCTGCACGTCTATTTCAATGTGCTGGATGGACACACTGGGCTAAATATGTATACTAAATATGATACTTCAACAAAACAATATAGGCTAATGAACACAACACCCTAAGACAATCTCAGTGCCTGAAAAAATCCTAAATAGGATTGAACTGCCAAAGCCTTCTGAAAAAATAAAACTAACATTGCACATAAATACTTTGATAGTTTGTTCTAAATTGATCAGTTTACTTTTTTGTATTCACTTTCGCTTATGAACTGATTGAATCCGTTATTCTTTATCAATTATATTTTCCCTCTATTCAAAATTTCCCTCAATAAATAGGCTATGTATTTTTTTTAAATAATAATTTATTTATAAATATTTTTTTACTAAATTTTTAATAATAATATATTATTATTATTATTATGTATAGTTTTATGGTCTCATATTAAGATATTAGGCCTATTTGTACTAAAAGTGTAATTTGTTACACCACAGAACTATTTAATTGAATTTCAGTGAAGTGATCAGTTACAACACCTATCTACATACACGTAAATTTAAAGCAAAACCTTGATATGGATATCTAAAATGTTTATGTCTATATTAAGTATCCTGTTATAGATCTAGAAATAGATATAAGACAAATGATACACTAGATACACTTTCCTTCCTAAACAAAACCGAGCACACACCTCAAGCACCGCTTTGGCGCGCATAGTCTATTCGAATAATGACATCATCGAGGCGCGCCGGCGTCCATTGTTATATGCGTACGGGGAATAATGGCGATGTGCACAATATTACGATGTGCTTCTGTTAGTTTGACCTCCTCTCTACCTCGACTCTCAAACAGAATCGCTGTGACTCCAAGTAGACTACTGGCGAGGACATGCTATAAAAGGTTCCTGAACACAACCACTCCATTTCGCGCAGCACTTAAGTTCACAGACAAACACGAGTGGGTTCGTGTGGACAGTGGTGTGGCAACAGTGGGCATTAGTAATTTTGCTCAGGAGGCACTGGGGGACGTGGTCTACTGTGGTCTCCCTGAAGTTGGCACAAAGTTATCACAGTCAGATGAATTCGGTACTCTGGAGAGTGTTAAAGCAGCGAGTGAGCTGTACTCTCCTCTAACGGGGGAGGTGACCGATGTCAATGATGCCCTGGCGGACAACCCTGGACTGGTCAACAAGTCTTGTTATAAAGATGGCTGGCTGATGAAGATGACTCTATCTGTTCCTGAGGAATTAGATGGACTGATGGATGAAGCTGCTTATGAGAGATACATCAAATCTATAGATGACTAGAGCGTTCTGCTGACCTGTTGCATATGGGGGAGAATTTAAAAAGAATCAATTAAGAAATGTTTATTTCTTCATCAAATACATTTTGTTTGTAGTTGATTTAGTTTAGATATTCTTCTAAATATATTTTCCCTTCAAGCCACACCCAGCCAATAGAGGGGACCACATGGTCACAACATTATGCACTACGCTTGGAAAGCAACAAGCAGACCTGGTTGGATTGAGCCAGTCATTTTCTAGCCACAGAGATTTGAAGATCACGCACAGCCTATGTAACAGTCTCATCTCTTTTGTAGATGTCACACTGTTTCTGTGAACGCTTGTCATTGCTTGGAATAAGCTATTAAGTATAAATAATACTTAATAAGGACCGGTATGAAATCTGATGAAATCTTTGTTGGTTTTGAGGAATCATAATTGAGTGAAAGTGATTAACATTAATTAACATCA

Function

symbol description
gcsha Predicted to be involved in glycine decarboxylation via glycine cleavage system and protein lipoylation. Predicted to be part of glycine cleavage complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in glycine encephalopathy. Orthologous to human GCSH (glycine cleavage system protein H).
gcsh Predicted to enable aminomethyltransferase activity. Involved in protein lipoylation. Predicted to be located in mitochondrial matrix. Predicted to be part of glycine cleavage complex. Predicted to be active in mitochondrion. Implicated in glycine encephalopathy. Biomarker of amino acid metabolic disorder.

GO:

id name namespace
GO:0005960 glycine cleavage complex cellular_component

KEGG:

id description
K02437 gcvH, GCSH; glycine cleavage system H protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_12099659_12100829.mRNA True 3268 mRNA 0.36 5 12097363 12101276

Neighbor

gene id symbol gene type direction distance location
CI01000013_11937264_11960076 IQSEC3B coding upstream 137037 11936811 ~ 11960326 (+)
CI01000013_11904219_11919859 DDX11 coding upstream 177456 11903696 ~ 11919907 (+)
CI01000013_11847961_11850982 TNNI1C, TNNI1D, TNNI1 coding upstream 246275 11847961 ~ 11851088 (+)
CI01000013_11771727_11775044 MIOX coding upstream 322319 11771727 ~ 11775044 (+)
CI01000013_11760681_11761860 NA coding upstream 334131 11760361 ~ 11763232 (+)
CI01000013_12260938_12264631 NA coding downstream 159662 12260938 ~ 12264631 (+)
CI01000013_12272623_12275499 NIP7, NIP7.L coding downstream 171347 12272623 ~ 12275721 (+)
CI01000013_12314589_12315317 RGS9BP coding downstream 211899 12313175 ~ 12315509 (+)
CI01000013_12379804_12398839 NA coding downstream 278245 12379521 ~ 12398839 (+)
CI01000013_12459982_12465113 PDCD10, PDC10, PDCD10B, PDCD10A, PDCD10.S coding downstream 358706 12459982 ~ 12465573 (+)
G84741 NA non-coding upstream 1904 12047870 ~ 12095459 (+)
G84736 NA non-coding upstream 56450 12039518 ~ 12040913 (+)
G84705 NA non-coding upstream 120324 11974147 ~ 11977039 (+)
G84627 NA non-coding upstream 127492 11969498 ~ 11969871 (+)
G84621 NA non-coding upstream 131032 11634720 ~ 11966331 (+)
G84769 NA non-coding downstream 26555 12127831 ~ 12131534 (+)
G84775 NA non-coding downstream 35915 12137191 ~ 12138110 (+)
G84820 NA non-coding downstream 131970 12233246 ~ 12233784 (+)
G84867 NA non-coding downstream 275613 12376889 ~ 12377247 (+)
G84879 NA non-coding downstream 318627 12419903 ~ 12420119 (+)
CI01000013_10756927_10790192 FRMD4A other upstream 1312606 10756927 ~ 10792761 (+)
G84250 NA other upstream 1881401 10215127 ~ 10215962 (+)
G84215 NA other upstream 2018027 10076454 ~ 10079336 (+)
G84194 NA other upstream 2060570 10030608 ~ 10036953 (+)
G84005 NA other upstream 2495128 9601611 ~ 9602235 (+)
G84768 NA other downstream 68713 12169989 ~ 12170818 (+)
G84790 NA other downstream 83666 12184942 ~ 12201975 (+)
G84864 NA other downstream 263773 12365049 ~ 12375905 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location