Gene
RNA
| Item | Value |
|---|---|
| gene id | G84736 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 12039518 ~ 12040913 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU96419 | True | 1396 | lncRNA | 0.32 | 1 | 12039518 | 12040913 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_11937264_11960076 | IQSEC3B | coding | upstream | 79192 | 11936811 ~ 11960326 (+) |
| CI01000013_11904219_11919859 | DDX11 | coding | upstream | 119611 | 11903696 ~ 11919907 (+) |
| CI01000013_11847961_11850982 | TNNI1C, TNNI1D, TNNI1 | coding | upstream | 188430 | 11847961 ~ 11851088 (+) |
| CI01000013_11771727_11775044 | MIOX | coding | upstream | 264474 | 11771727 ~ 11775044 (+) |
| CI01000013_11760681_11761860 | NA | coding | upstream | 276286 | 11760361 ~ 11763232 (+) |
| CI01000013_12099659_12100829 | GCSHA, GCSH | coding | downstream | 56450 | 12097363 ~ 12101276 (+) |
| CI01000013_12260938_12264631 | NA | coding | downstream | 220025 | 12260938 ~ 12264631 (+) |
| CI01000013_12272623_12275499 | NIP7, NIP7.L | coding | downstream | 231710 | 12272623 ~ 12275721 (+) |
| CI01000013_12314589_12315317 | RGS9BP | coding | downstream | 272262 | 12313175 ~ 12315509 (+) |
| CI01000013_12379804_12398839 | NA | coding | downstream | 338608 | 12379521 ~ 12398839 (+) |
| G84705 | NA | non-coding | upstream | 62479 | 11974147 ~ 11977039 (+) |
| G84627 | NA | non-coding | upstream | 69647 | 11969498 ~ 11969871 (+) |
| G84621 | NA | non-coding | upstream | 73187 | 11634720 ~ 11966331 (+) |
| G84741 | NA | non-coding | downstream | 6957 | 12047870 ~ 12095459 (+) |
| G84769 | NA | non-coding | downstream | 86918 | 12127831 ~ 12131534 (+) |
| G84775 | NA | non-coding | downstream | 96278 | 12137191 ~ 12138110 (+) |
| G84820 | NA | non-coding | downstream | 192333 | 12233246 ~ 12233784 (+) |
| G84867 | NA | non-coding | downstream | 335976 | 12376889 ~ 12377247 (+) |
| CI01000013_10756927_10790192 | FRMD4A | other | upstream | 1254761 | 10756927 ~ 10792761 (+) |
| G84250 | NA | other | upstream | 1823556 | 10215127 ~ 10215962 (+) |
| G84215 | NA | other | upstream | 1960182 | 10076454 ~ 10079336 (+) |
| G84194 | NA | other | upstream | 2002725 | 10030608 ~ 10036953 (+) |
| G84005 | NA | other | upstream | 2437283 | 9601611 ~ 9602235 (+) |
| G84768 | NA | other | downstream | 129076 | 12169989 ~ 12170818 (+) |
| G84790 | NA | other | downstream | 144029 | 12184942 ~ 12201975 (+) |
| G84864 | NA | other | downstream | 324136 | 12365049 ~ 12375905 (+) |
