G308190


Basic Information

Item Value
gene id G308190
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1129540 ~ 1159266 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU424311
CTTGTCAATCCAGATTGTTCTGATtatccatatttttttatttattattacatcaaTCAATCCCtcattttttacaattatttaatttattattttttatgatccTATTAAACATAATATGGATGCTTTTGACTCTGAGGAAGTGGGGAAAGAGGCACACTGGAACACAAGCCTGTGGCTTAATTCATACAATATATATGagaatactagtgcatctcaaaaaaatagaatataattgaaaagttcctttatttcagtaattcagttcaaaatgtgaaactcatatattatatagatgtattaaacacagagtgatctatctTAAGAGttgatttcttttattgttgttgattatggtttacagccaaataaaaaaaacaaatatcagtatctcagaaaattagaatattatataagaccaatttatacttttggcagtgtgggcagtgcgccaagtcctgctggaaaatgaaatccccatcTAATAATATGGACATGAATATAATAAGGTTTAAGTGtcttaaataataattcaatgCTGTGTGTCTTCATTCCCTCTTCCCTTGAGTCAGcgttttcctcttgattaaaggagaactccagtgtaaaatgatttttttattttttgctgtagtaaaacatgataaaagtccttacctttgatgaatagcacactctgttctcccacagctttcagagatccagaacTGACTGGgcgacacggggcataatttaccctgataaatcactttttccatcgttatccagctcaaagtagctctacacctccttactagaatccggagagccctgacatttaagacgaggcattaataacttaaaaaagtgcaaaagaagcttattaaacacTGCTATCACTGTGAACTGATAATGAcgtagacatatatacatagacgtagactctgcatagcgtagcagctggTGCCaagaggcaggctatgcggagtctatgtatatatgtctgttaactgttaaaatttctggatctctgaacgctgtgggaggaCAGAGTTGTGCTATTCATAAAAGGTAAgaacttgttatcatgttttactacaacaaaattaaaagtccatttttaaattggacttctcctttaaatgAAGGGAAGTTATAGGGGCATTCAGTACTAGCCTATTGAAACACTGTGATTATTATCCACCAGGTGTCATCAAAGCTACCTCCCTCCCACTTTAACTATCAGTAAATCTGCCTGAACTAAAAGCAGTACAGGACgcccatatgtgtgtgtgtgtgtaagagagaaagagtgtgtgtacaCTGGAAATGATGCCTGTAATCTCATTTTAATGCAAACAGGTGGATTTCCACTTGTCGCAATGTGGTGCTTTAGGAAAAACACGCacaaacactcatacacactcacactcacacacattcacactcatAGTACGATACAGGGCGTCTCGACTGCAGTACTCAAGGTACTTCGAATATATCAGACTTTTTCTATTAATACTACTTGCTGGAAGCAATATGTGAAACTCTTTATCATACCTTAATTATATAATTCTCTATCATATATTACATTCatcattaaaataatgtttgcacccagaaggaagattaaaaataaccagaaacaataaataaatacactctaCGCAGGTTTACCTACTGTAGGTgtgtcacgatgctcattgctatcttacaccccaacagccaacagtctgttttcacacctgtggcATCTGTCGactaaatagcaacagtgcttctgattatacagctctggaaaaaaattaagagaccaaatCAGAACactttctaaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaatttcagacctcaaatataagaaaacaagttcatattcataaagttttaagagttcagaaatcaatatttggtggaataaccctggtttttaatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424311 True 2003 lncRNA 0.35 2 1129540 1159266

Neighbor

gene id symbol gene type direction distance location
arhgef17 si:ch211-248g20.5,arhgef17,LOC107660677,LOC107658857 coding upstream 57017 894860 ~ 1072523 (+)
p2ry6 p2ry6,LOC107705774,LOC107601092,LOC107660676,LOC107735228 coding upstream 242249 859048 ~ 887291 (+)
fam168a fam168a,LOC107600264,LOC107594362,LOC108264593,LOC107705757 coding upstream 287853 783475 ~ 841687 (+)
LOC103036410 fchsd2,LOC107705784,LOC107594367,LOC107600282 coding downstream 20291 1179557 ~ 1333842 (+)
LOC103036707 NA coding downstream 181201 1340467 ~ 1352751 (+)
rps3 rps3,LOC102795110 coding downstream 194496 1353762 ~ 1361925 (+)
kctd14 kctd14 coding downstream 204448 1363714 ~ 1366089 (+)
ints4 ints4 coding downstream 218340 1377606 ~ 1401271 (+)
G308185 NA non-coding upstream 3200 1074301 ~ 1126340 (+)
G308228 NA non-coding upstream 23387 1105095 ~ 1106153 (+)
G308223 NA non-coding upstream 115313 1012427 ~ 1014227 (+)
G308222 NA non-coding upstream 137907 991095 ~ 991633 (+)
G308218 NA non-coding upstream 172773 953501 ~ 956767 (+)
G308307 NA non-coding downstream 36310 1195576 ~ 1225465 (+)
G308312 NA non-coding downstream 66939 1226205 ~ 1226823 (+)
G308317 NA non-coding downstream 103873 1263139 ~ 1264020 (+)
G308322 NA non-coding downstream 123571 1282837 ~ 1283773 (+)
G308324 NA non-coding downstream 178122 1337388 ~ 1338341 (+)
G308090 NA other upstream 943465 185337 ~ 186075 (+)
serp1 NA other downstream 668638 1827904 ~ 1832674 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 858198 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 971813 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 1160625 2319891 ~ 2338166 (+)
G308680 NA other downstream 1397061 2556327 ~ 2556569 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G26090 NA non-coding CI01000004 null 2930142 ~ 2930557 (+)