G308312


Basic Information

Item Value
gene id G308312
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1226205 ~ 1226823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU424461
ACTAACTAAATTATAATCAATAGCGGTTAATAGCGGTTATTGAATAATACATAATAGTtccttaataattaataacaggTACTCAATAATGCATATGGAATAATTCATATTGGGTACTGAACacattcatagtggatactgatcAATTCAGAGTAGTGACACCTAATAATGGTTAATTGTTAAGACTGATACCTGAATAAGGAACCTACTGATCAGGATTTCAGTACTGCACTTCCACAATGCAGCCTGCCATCCCAGAATACTGATGAACACTCTGCCCatctacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagtgtgtgtgtgtgtctgtgtgttcattttaatcagagACATTACAGCTCAGGTATTCAGGTACCTGCAAGAATCCTCCGTTCCGGTGTGAAAACGGTTGCTTAGCAACATGCCTCACCCCTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424461 True 549 lncRNA 0.41 2 1226205 1226823

Neighbor

gene id symbol gene type direction distance location
relt relt coding upstream 70916 1084433 ~ 1155289 (+)
arhgef17 si:ch211-248g20.5,arhgef17,LOC107660677,LOC107658857 coding upstream 153682 894860 ~ 1072523 (+)
p2ry6 p2ry6,LOC107705774,LOC107601092,LOC107660676,LOC107735228 coding upstream 338914 859048 ~ 887291 (+)
fam168a fam168a,LOC107600264,LOC107594362,LOC108264593,LOC107705757 coding upstream 384518 783475 ~ 841687 (+)
LOC103036707 NA coding downstream 113644 1340467 ~ 1352751 (+)
rps3 rps3,LOC102795110 coding downstream 126939 1353762 ~ 1361925 (+)
kctd14 kctd14 coding downstream 136891 1363714 ~ 1366089 (+)
ints4 ints4 coding downstream 150783 1377606 ~ 1401271 (+)
rsf1 rsf1,LOC102310057 coding downstream 189519 1416342 ~ 1434932 (+)
G308307 NA non-coding upstream 740 1195576 ~ 1225465 (+)
G308192 NA non-coding upstream 65470 1103759 ~ 1160735 (+)
G308190 NA non-coding upstream 66939 1129540 ~ 1159266 (+)
G308185 NA non-coding upstream 99865 1074301 ~ 1126340 (+)
G308228 NA non-coding upstream 120052 1105095 ~ 1106153 (+)
G308317 NA non-coding downstream 36316 1263139 ~ 1264020 (+)
G308322 NA non-coding downstream 56014 1282837 ~ 1283773 (+)
G308324 NA non-coding downstream 110565 1337388 ~ 1338341 (+)
G308388 NA non-coding downstream 212435 1439258 ~ 1439566 (+)
G308441 NA non-coding downstream 404336 1631159 ~ 1632002 (+)
G308090 NA other upstream 1040130 185337 ~ 186075 (+)
serp1 NA other downstream 601081 1827904 ~ 1832674 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 790641 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 904256 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 1093068 2319891 ~ 2338166 (+)
G308680 NA other downstream 1329504 2556327 ~ 2556569 (+)

Expression


Co-expression Network