rsf1 (rsf1,LOC102310057)


Basic Information

Item Value
gene id rsf1
gene name rsf1,LOC102310057
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1416342 ~ 1434932 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665967.1
atgtgtagtgtgtatatatacagtgtgtgtgtgtgggtaaaaACCCCCGCTGGAAAACATGGCTGCTCCGGCCGCTGCGCCGGCTCTTGCGCCGGCTCTGTGCCCGAGCTTCGCCGTGGTGTGCTCGTTCCTGGAGCGCTACGGAGCCGCGCTGGACCTGCCCGAGCTCTCCTTCCCGGAGATGGAGCGGTTCCTGCGGGACAGATCTGCAGTTCCACAACCTCTTGTCGAGCTCCATGTCAAACTGCTGCGCAAACTGGGCAAGACAGTGTCTTCAGAGAGATGGGAAAAGTATCTGGTCAAGgtgTGTCAGGAGTTTAACAGTACCTGGGCCTGGGAGCTAGAGAGTAAAGGCTACCCTGAGATGCCCATGGAGTGCAAAGCTGATATCCTTAAGtatttatgtgAATGCCAGTTTGATGACAACGTCAAGTTTAAGACAGCAGTCAACGAGGAAGATCCAGACCAGATGCGCTTGCAGCCTATTGGTAGAGATAAGGAAGGGCTGTTGTACTGGTTCCAGTTGGATCAAGATCAGAACGTGCGGGTTTATGTGGAGGAGCAGGATGATTTGGATGGTTCTTCTTGGAAGTGCATTGTCAGGAATAGGAATGACCTGGCAGATATTTTGGAGGCACTTAAAGGCAAGATGGACCCACCAATGACAGACCAGGAGCAACAAGATGGTTCTTCTGGTAATCCAACAGAACAGGAGAAGGAGACGACAGAGAAGATCTGTTCCAGTGATAACATCAAAAACAAGAAGAGAGCTGGCCAAGCAGACTGTTCAGATTCTGAAGAGGACAGCAAACAGATAACcatgaaaaaagaagaagaaagcctgtcaataaatgaaaatattaaaaaggcGACTGTTCCTCTTATTAAACTAAAAGAAGAGCGAAAGGATGAGCTTAAAGTGAAGCCTGTTGTAACCGAAAAGCCACCTACATTAGAGCATCCTCTTGTTATAGATAATAGAGTTAGCACCATTAAGAGCCTGGTGAAGGATGAGCCCAGGGACTCTCCGAGACACTGGAACGCTATCTCCGTTGTGAAGTCTCCGGGCTCTCTGAAGCAGGAACTTCCAACAAAGACTGAGGCCTTCAGGGACAAGAAAGCTGAGGACGTGGAGAGGGCTATAAAAAATGACCAGCAGGCGAAGATACCTCTGAAAAAGAGGGAGCTGAAGAGGAGCGACAGTTACGACAGCAACCATTACAGCAACATAaaccacaataataataacgttAGCAACAACGGGAGCGTTAGCCTTGGGGGTATAATCGTTCGTAATCCAGCGGTTTTGGCACTAAGTGATCAGCAGGCTGGGCGTAACATGGAACTTGGTGGcgaaaataagactttaatgCCTATGGCTCCTTGTATAGGTACGGGAAACCTGCTTAAACCAAGTTCTGAACCAGCTACGAGAGAGCATTACGTAGGTATTGGAGTAATTATGGGCCCGGTTGAGAGAAACAGAGCGTTTGACCAGCCTGAGAATTTGACCACTCCTACAAAGGACCGAAACGGCCTTCACGGAGATGGTAAGATCAAGTTTAAAGCTGAGATGACACCGGCTGAGAATATAAGACAGTCTGTTCTAGTAAGAAAACCTAGTCTTACACCTGAAAATTCCAGTATTCATCATTCCAGCATCAGTGAATCTAAAATTCATAAAATAGAGCAAGCCGATTGTGAGGATTCAGCTCCCGGAAAGGTTTCTGTAGGTGATTCGGATGAACCTTTGAATTTTGCAATGCCAAAAGTTAGCGAAACAGCCGTTAATGAGGTGAAATCTGTGATAAAAGTTATTCCAATTGAGCAAAGCTCACCTAAAGCAGTGGCCACACTTGAAGAAGCGGTCACGTCATCCACATGTGGGaatatagaagaagaagaagaagaagaagaagaggaggagctaACGGAAAAGAAGAAGCCTAAAATGACAGAGCAAACGCCGCAAAGTGGACAAGTGGAAGCTATGcaagaaaacaaaggcaaaggATACAAAAGCTCAAGGAAACGAAGATCAGAGAAGACAAAGGTCAAAATGCAACCAGGAGAAGCTCCGAATAAGCTTCGCTGTGAAGGTACGACAAATAACGACGATGAAGAAGTGTCGTCAGAGTTACAAAAAGAGGGAATTCGCCTAAAAATCAAGATCCCGCTGCACAGACGCACGCCCAAGCTCCAGCTGGAAAGAGCCAGGGACGACCTGCAGGCCTCAGACCGACGTTCACTCCGGAGGTCAGCGAGAATCTGCAGGCCCAGTCCAAAACTGGCCGAAATTCAGGTCAGGAAGCGCGGGAAGAAGCAGACGATGCCCCCTGCAGCACGCGAGGTCGAAGAGCACAAAGATGATGAAGCAGAGAAAACGCTTCCTAAGAGGGATGTTGCAACCAACCAGGGTCCGATCAAGTCTGCAAGGGGTAAGCGGCGGCACCGGCGAGCTCGCTGGTCaaaaaccaaactgaaaaagCCATGCAGAGTGGAAGTGGCTCCACAGGAAGATGTGGTGCCGGAGAATAAACCGGAGGGAGCGGAGGAGAAAAGCGAGTCAGAGTCCGAGCCCTCGGAAGAAGCTCCGCCCGAAGACGCCTGTAAACACTGCAGCCTCCCGAACCATCCTGAACTGATTTTGCTGTGTGACCTGTGTGACAGTGGATACCACACGGCCTGTCTGAGGCCTCCTCTTATGATCATCCCTGATGGAGAATGGTTCTGTCCTCCCTGTCAGCATaAGCTGCTGTGTGAGAAGCTGGAAGAGCAGCTGCTGAATCTGGATACAGCGCTGAAGAAACGTGAACGAGCTGAGAGGAGGCGAGAGCGTCTGGTGTATGTGGGCATCAGTGTGGAGAATATTATACCCAATCCTGATGCTGAAGTTGAGGATAAAAAgcaggagaagaagaaagatgCAAAGAAGAGTAAAAACCTGGAGAGGAGATCCACACGGCAGAGAAAGTCTATTAGCTACAGGTTTGATGACTTTGACGAAGCCATTGATGAAGCAATAGAGGAGGACATACAGAACTCAGAGGAAGGAGGTCCTGTGGGGGGTCGTGGTAAAGATATGGCCAACATCACGGGCCAGAAGGAGAAGGAAGTGGATAAAGAGAACCGGAGGCCTGTGAAACCTGCTGCCCCTCGCAGGAGGAAACGCCGCCGGCGACTCAACGACCTGGACAGCGACAGCACTCTGGAGGACGAGGAGAGCGAGGATGAGTTTCACCTGAGTGACAGTATGGAGGAGGAAGATTTTGTGGTGTCGGGTGACGATGCAGCGAGTGATGGGGACGCTGCCTCGTGGGACGGGAGCGACTGGGGCAGCGTCACGAGCAGACCTGGCCGTCTACCCCTCCCCAAAAAAACAGCCCGAAACATTCGAAACCAGAAAGTCAAGAAAACCACACGGAAATCCACCAGACGACAGAAAGGATCttcagaggaggaggagctttTAGAaacggaggaggaggaggagatggAAACCGAGGGCTCCAGCGACTTCGACGACAGTGATGTGGACATGAGGAGACGGAGGTCACGGCGACAGAACGCACAGGTTAACTACTGCGAAACCTCCGAGTCTGAGGGGTCACACAAAATCTCCAAACAGAAAACTGCCCAACCACGCCGCAGACGACTGTCCAGCTCCAATAcgTCGGCTGTTTCCAAGGACTCTGAACCAGAGGAGGAGTCTGAGAGGAGGCCGAGGGGGAGGAAACGGGAGTCGACCAGAGAAGACTCCAAACAGAGGCACAAACCGCTAACCCTGAAACGACCCCGGAGTTCAAGCGAGGAACAGGAGGGGGAGGAAACGGGCGAGGAAGGAGAGAGCGAATCGGACGAGGAAGAGCGGCCGGTACGAAAGAGGCTGAACCGCATCGAGACAgacgaggaagaggaggaggaagaggtggAGCGAAGGCCGATGAGAAACGCACACGGAAAACGAAGGAGTGGAGCTAAAGACTTCAGCCAGCTGCCTGCTAGGGCGCCCCCTAGAGGATCGGAGGGTTTATTGCCAAAGCACACGGGCCGACACGGCGGGACTCCTCACGGAAGGCACAACGGCCTGGTTCCTCCGAGGCCTACAGCTCAGGATGaagacgaggaggaggaggatgacctCACGGCCGTTACGGACCTTGTTAACTTTGTTTTTGACAGTGAACAGTTGTCGTGATTGTGCTGAAtagatttaatatataatttttttttctcatggcCTTTCACCAGTGTCCACCGCCCAGGTGGGTTTCCCAGTGTCGGTCACCATAAAcctcctgttttatttttatttttattgggtGTACTGGACCAATACATACGACAGCGCTTTAGGGCCTCTGTTataaagaaaactaaacagTAGACTTTGAGAGTAGAGccataatattttaagaataaagttttaaaataatatttagagaaaaaaatgataaagtgCTATTGCAAAATTTGATGATAATGTGGTATtgctacaagaaaaaaaattatatttcaagctttaaaaataaatgaattaaatgacaACGCTAAAATGGTATTGCTAGCAGGAAAAGTTACAATATTATATCCAGAGAGTTACACAAGTAACATAGTGTTAAAATGTGCAATGCTGAGAATTTTGTAGTTTTAGCATCGGTTTTACCGATCTCCTGGACCAGCAGAAGATTATACTAAGAAAAATCTGGTGCTGGTGGTTTAGGAGTATTTCTTTACTGGTTTATTGCTTTAATGATCTGAAAGTATTACTACCTAAATCCTCAACATCTTAAAAATGACTTACCTGTTAGTattcctctttatttttaaaatattacaattttattcTCAATAAAATTTCAAAtctattctcaaaatattgactttattttcaaaatgttaCGTCTTTATCCTCGAAGtctactatttttatatattttaaacagtggCCCCAACACGCTGTAGTAAATACAAGCTTCCAGAGGAATGCCATTGTGTCTTTTCACGTGATGTCCGAATGCACTCTAGTTTCTTCCTACCATCCCAGCATcacagcatgcacacacacttacacacacacttacacacacacatccatatatacagatatacccAGGTTTAGTACAGGGTCccagtaaaacacatttacagatAGCTGTTCTTCTGAGAGATAAGCACTATGTAATTTAAGGCCAGTAAAACGTCATCTGTATTACAGAGGCTTCTATATTGTCCTATAGAGACACTTTACACTGTACATTTTCAGGCTTGTATGTTACTGCATTTCAGATTGGTGTTTTAGagatgtttttagttttattctctgtaaaaaagaagaaaacaaaaagaaaaaagtttttatatgAAAGAGAGGGTCTATGGGAATCTGCTCAGCAGTTTGAAATTTGACTTTTGTTCTGttgaattgttttaaaattctcAGTAATTATCAGTAATTTTGTTTATTCAGAATCTTGTTCATTCAAAGCTAACTTTAGTGACATTTACTGACACGTTCTGCCATTGGAAAGGtatgaaaatgatttaaaatagtgCCCCGGGATCCGTAAAGGTGCACAGTTTAGTCGAAGCTAATTTATCAAAACAGCTTTACTGACATAGATAGATTTTATAACCACTTTATTGTAACATGCTATGCTTAACGTTAAGTCTTACTGCTGTCTTTTTACAGATTACATTATTTCATTAAGTCCTAAAAGGACTGTACtgaagatatttaaatatatataatttttattatttgcccaAAATTATAGTAAGTCTACGAGGGCGGTCCATTTGATAcactctgtgttctctgtggcACACATTTTCTGATTTGTGGGTCAATTTCAGTTTTCCAGAAGGTTCccggacagggattaagcctagcctTGGATTACACAGCAT

Function

symbol description
rsf1 Enables histone binding activity. Involved in several processes, including chromatin organization; positive regulation of viral transcription; and regulation of transcription, DNA-templated. Located in nucleoplasm. Part of RSF complex.

NR:

description
PREDICTED: remodeling and spacing factor 1 isoform X2

GO: NA

KEGG:

id description
K22768 MBD9; methyl-CpG-binding domain-containing protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665967.1 True 5910 mRNA 0.46 16 1416342 1434932

Neighbor

gene id symbol gene type direction distance location
ints4 ints4 coding upstream 15071 1377606 ~ 1401271 (+)
kctd14 kctd14 coding upstream 50253 1363714 ~ 1366089 (+)
rps3 rps3,LOC102795110 coding upstream 54417 1353762 ~ 1361925 (+)
LOC103036707 NA coding upstream 63591 1340467 ~ 1352751 (+)
LOC103036410 fchsd2,LOC107705784,LOC107594367,LOC107600282 coding upstream 82500 1179557 ~ 1333842 (+)
clns1a clns1a coding downstream 5838 1440770 ~ 1448730 (+)
pak1 pak1 coding downstream 27031 1461963 ~ 1564464 (+)
LOC103038299 gdpd4a,LOC108431176,LOC108264809,LOC107735911,LOC107660699 coding downstream 150530 1585462 ~ 1634209 (+)
omp omp,ompa,LOC107660685,LOC107735103 coding downstream 310388 1745320 ~ 1750243 (+)
LOC103029868 NA coding downstream 352384 1787316 ~ 1790876 (+)
G308324 NA non-coding upstream 78001 1337388 ~ 1338341 (+)
G308322 NA non-coding upstream 132569 1282837 ~ 1283773 (+)
G308317 NA non-coding upstream 152322 1263139 ~ 1264020 (+)
G308312 NA non-coding upstream 189519 1226205 ~ 1226823 (+)
G308307 NA non-coding upstream 190877 1195576 ~ 1225465 (+)
G308388 NA non-coding downstream 4326 1439258 ~ 1439566 (+)
G308441 NA non-coding downstream 196227 1631159 ~ 1632002 (+)
G308444 NA non-coding downstream 208902 1643834 ~ 1645171 (+)
G308448 capn5,LOC108264643,LOC106535735,LOC107713096,LOC107665347 non-coding downstream 302508 1737440 ~ 1741024 (+)
G308453 NA non-coding downstream 336972 1771904 ~ 1784753 (+)
G308090 NA other upstream 1230267 185337 ~ 186075 (+)
serp1 NA other downstream 392972 1827904 ~ 1832674 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 582532 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 696147 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 884959 2319891 ~ 2338166 (+)
G308680 NA other downstream 1121395 2556327 ~ 2556569 (+)

Expression


Co-expression Network