G308444


Basic Information

Item Value
gene id G308444
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1643834 ~ 1645171 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU424626
acatttaaaataaatttgaaagAGATTCCAGAAATAAACAAGCTTATTCCAATCTATTTCACAGTCCTCAAAGCTATAAAACAAAGtacttacagaaaaaaatgaggaGAACAAATTAAGGCTTCCAACAAaagactaaaatataaaataaaataaaaacagtttacaCAATTCCAAATCTCACTCacaaatacaatacatacacacatacaagtCTTACAAAACCGTCCACCAAACCTTCCATCATTACTGTGCTGTAAATTTTCCAACACTGTAGTTCAGAAAATAGCAGGTTAATCGCATTAATTTTGTGTTTGATCataataataaagaggaagaagaaCTAAATCATAAACAGTCCACTCTAAACACACTGAAACATTGAGCtcaaattatattatttctgctgtagactgaaaacatttgtgtttgatattaaaagatgaatatgagaaAAAGGATTTCATCAAGGGGCAAGAAGTGAAAGTTTTTTAGACTGGCATAATTAATCtccagattgaaaaaaaaaaatatatatatatatttataataatataattatatatataataatataaatataatataaatactcccctgtctctctctctgtcacactcgGCCTGAATGtagtttccacctgttctcgtttttccgcccgttcttgtggctccttataagggtgtttttttttcggcTGTgttccaattcactagccggggcagtaGTAGTGTACATGACCCTGACGACATGggttcttgggtttacctgctttaagatcaactgttcttcaattgggttcaacaaccctctggctggagagctactagtctgtaacacatcccattacactacattttacaaaacagattttttttttgtggccgccacataatggcttggaaaatatctggcccgggGCCAAACTTAATAGCTGACTCCTGATAGAGACGATGCCTTTTTATAGAGCATGCATTTACTTCTTGGagaggagactgaagggagtaccccccccccccaaacaccaGCTGAAAAAGGCTGCAGGGAAAGCCTGGAAAACCATCACAAAATAGGAATACTTGATGCAGTTAtagcaagcaaaaaaaatgcaattaaatattaagtcaTTTTCACTTTAATCTATCTTCTAAACTGTCCAGATCCAGACATTAATTCATTGAAATGTGATCTTTTGTCACATATTTGTGTCACATATATGTTCTACTGTCAAACTCAAgttttttcagtctacagcaaaaataaagggatcagcctcactgttccaatatttTTGGAGGGAAATGTATTACatcatatactagtgcatctcaaaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424626 True 1338 lncRNA 0.34 1 1643834 1645171

Neighbor

gene id symbol gene type direction distance location
LOC103038299 gdpd4a,LOC108431176,LOC108264809,LOC107735911,LOC107660699 coding upstream 9625 1585462 ~ 1634209 (+)
pak1 pak1 coding upstream 79370 1461963 ~ 1564464 (+)
clns1a clns1a coding upstream 195104 1440770 ~ 1448730 (+)
rsf1 rsf1,LOC102310057 coding upstream 208902 1416342 ~ 1434932 (+)
ints4 ints4 coding upstream 242563 1377606 ~ 1401271 (+)
omp omp,ompa,LOC107660685,LOC107735103 coding downstream 100149 1745320 ~ 1750243 (+)
LOC103029868 NA coding downstream 142145 1787316 ~ 1790876 (+)
LOC103031553 pcyt1a,LOC108440592,LOC108264716,LOC107091881 coding downstream 189506 1834677 ~ 1847584 (+)
cstf3 cstf3,LOC107671440 coding downstream 431430 2076601 ~ 2112984 (+)
eif3m eif3m,LOC107602127,LOC107671036 coding downstream 576798 2221969 ~ 2236883 (+)
G308441 NA non-coding upstream 11832 1631159 ~ 1632002 (+)
G308388 NA non-coding upstream 204268 1439258 ~ 1439566 (+)
G308324 NA non-coding upstream 305493 1337388 ~ 1338341 (+)
G308322 NA non-coding upstream 360061 1282837 ~ 1283773 (+)
G308317 NA non-coding upstream 379814 1263139 ~ 1264020 (+)
G308448 capn5,LOC108264643,LOC106535735,LOC107713096,LOC107665347 non-coding downstream 92269 1737440 ~ 1741024 (+)
G308453 NA non-coding downstream 126733 1771904 ~ 1784753 (+)
G308457 NA non-coding downstream 144367 1789538 ~ 1823595 (+)
G308459 dcun1d5,LOC107712802 non-coding downstream 151687 1796858 ~ 1806837 (+)
G308465 NA non-coding downstream 171889 1817060 ~ 1819101 (+)
G308090 NA other upstream 1457759 185337 ~ 186075 (+)
serp1 NA other downstream 182733 1827904 ~ 1832674 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 372293 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 485908 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 674720 2319891 ~ 2338166 (+)
G308680 NA other downstream 911156 2556327 ~ 2556569 (+)

Expression


Co-expression Network