RNA id: TU424626


Basic Information

Item Value
RNA id TU424626
length 1338
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G308444
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1643834 ~ 1645171 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acatttaaaataaatttgaaagAGATTCCAGAAATAAACAAGCTTATTCCAATCTATTTCACAGTCCTCAAAGCTATAAAACAAAGtacttacagaaaaaaatgaggaGAACAAATTAAGGCTTCCAACAAaagactaaaatataaaataaaataaaaacagtttacaCAATTCCAAATCTCACTCacaaatacaatacatacacacatacaagtCTTACAAAACCGTCCACCAAACCTTCCATCATTACTGTGCTGTAAATTTTCCAACACTGTAGTTCAGAAAATAGCAGGTTAATCGCATTAATTTTGTGTTTGATCataataataaagaggaagaagaaCTAAATCATAAACAGTCCACTCTAAACACACTGAAACATTGAGCtcaaattatattatttctgctgtagactgaaaacatttgtgtttgatattaaaagatgaatatgagaaAAAGGATTTCATCAAGGGGCAAGAAGTGAAAGTTTTTTAGACTGGCATAATTAATCtccagattgaaaaaaaaaaatatatatatatatttataataatataattatatatataataatataaatataatataaatactcccctgtctctctctctgtcacactcgGCCTGAATGtagtttccacctgttctcgtttttccgcccgttcttgtggctccttataagggtgtttttttttcggcTGTgttccaattcactagccggggcagtaGTAGTGTACATGACCCTGACGACATGggttcttgggtttacctgctttaagatcaactgttcttcaattgggttcaacaaccctctggctggagagctactagtctgtaacacatcccattacactacattttacaaaacagattttttttttgtggccgccacataatggcttggaaaatatctggcccgggGCCAAACTTAATAGCTGACTCCTGATAGAGACGATGCCTTTTTATAGAGCATGCATTTACTTCTTGGagaggagactgaagggagtaccccccccccccaaacaccaGCTGAAAAAGGCTGCAGGGAAAGCCTGGAAAACCATCACAAAATAGGAATACTTGATGCAGTTAtagcaagcaaaaaaaatgcaattaaatattaagtcaTTTTCACTTTAATCTATCTTCTAAACTGTCCAGATCCAGACATTAATTCATTGAAATGTGATCTTTTGTCACATATTTGTGTCACATATATGTTCTACTGTCAAACTCAAgttttttcagtctacagcaaaaataaagggatcagcctcactgttccaatatttTTGGAGGGAAATGTATTACatcatatactagtgcatctcaaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424622 lncRNA upstream 11832 1631159 ~ 1632002 (+) True G308441
TU424621 lncRNA upstream 12076 1631350 ~ 1631758 (+) False G308441
TU424557 lncRNA upstream 204268 1439258 ~ 1439566 (+) True G308388
TU424475 lncRNA upstream 305493 1337388 ~ 1338341 (+) True G308324
TU424471 lncRNA upstream 360061 1282837 ~ 1283773 (+) True G308322
TU424630 lncRNA downstream 92269 1737440 ~ 1741024 (+) True G308448
TU424635 lncRNA downstream 126733 1771904 ~ 1784753 (+) True G308453
TU424641 lncRNA downstream 144367 1789538 ~ 1823595 (+) True G308457
TU424643 lncRNA downstream 151687 1796858 ~ 1806837 (+) True G308459
TU424650 lncRNA downstream 171889 1817060 ~ 1819101 (+) True G308465
XM_022665965.1 mRNA upstream 9625 1585462 ~ 1634209 (+) True LOC103038299
XM_022665966.1 mRNA upstream 9827 1585462 ~ 1634007 (+) False LOC103038299
XM_022666006.1 mRNA upstream 79370 1461963 ~ 1564464 (+) True pak1
XM_007257762.3 mRNA upstream 195104 1440773 ~ 1448730 (+) True clns1a
XM_015607997.2 mRNA upstream 195823 1440770 ~ 1448011 (+) False clns1a
XM_022665989.1 mRNA downstream 100149 1745320 ~ 1750243 (+) True omp
XM_007257763.2 mRNA downstream 142145 1787316 ~ 1790876 (+) True LOC103029868
XM_007257764.3 mRNA downstream 182733 1827904 ~ 1832674 (+) True serp1
XM_007257769.3 mRNA downstream 189506 1834677 ~ 1847584 (+) False LOC103031553
XM_007257770.3 mRNA downstream 189780 1834951 ~ 1847584 (+) True LOC103031553
TU424184 other upstream 1457759 185337 ~ 186075 (+) True G308090
TU424711 other downstream 372293 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 485908 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 674720 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 911156 2556327 ~ 2556569 (+) True G308680

Expression Profile