RNA id: TU424471



Basic Information


Item Value
RNA id TU424471
length 908
lncRNA type intronic
GC content 0.33
exon number 2
gene id G308322
representative True

Chromosome Information


Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1282837 ~ 1283773 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ataaacagatagACATGGTAtctaggtaggtatgtaggtagacagaaagacaggcaGACAAAGTAGTGTAAAgttagagacagacagacagaaaggcagGCAAACAAGCAtttagatagacagataaacagactaACAGATAGAAAGTCATGCAGACAAACAAGTATatagttagacagacagacagacagactgaccgATAGATATACAGACAATTAGACAGCCAGGCAGACAAACAagtatacagacagacagacagatagataggcAAGCAACCCATTATATAGCtagacagactgacagatacacaaacaaacagttaGACAGACtgaaagatagacagacaggtacacagacaaatatatgtaaacaATTAGATAGAAATACAGCCAGGCAACCAAGtatacagagacagacagacagacagacaggaaagCAACCCAGTATATAGGTAGACAGACTgacatatacacaaacaaacagttaaataaatagaataatgaCTAGAAAGATAGTCAGGCAAATGTggatatagacagacagacagacagacagatagataatgGGACAGATAGAACAGTTAAAAaggtagtaaataaatataataagttTGCTAAAAGTTTATTCCGTATTTTGAGTAAACACTGTATTACCTAAAATGAACATATGAGACCCACTAAAAAAATTAGGAtgttacttacttatttatttataccaaAGCTTACTTtacaaaatctgtaatattctgttattaatttacagtaaattactatttaaatataatggTACTTAACAGTGAATTACTATAATTTTACAATCCTTTATTGCATCTTTTTGCTGTTAACTTTTTATTATGTAGATGTTCATATTACTGTATTGCAGAATTATCAGTCTAAACTGATGAATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU424466 lncRNA upstream 18817 1263139 ~ 1264020 (+) True G308317
TU424461 lncRNA upstream 56014 1226205 ~ 1226823 (+) True G308312
TU424455 lncRNA upstream 57372 1195576 ~ 1225465 (+) True G308307
TU424313 lncRNA upstream 122102 1103759 ~ 1160735 (+) True G308192
TU424475 lncRNA downstream 53615 1337388 ~ 1338341 (+) True G308324
TU424557 lncRNA downstream 155485 1439258 ~ 1439566 (+) True G308388
TU424622 lncRNA downstream 347386 1631159 ~ 1632002 (+) True G308441
TU424621 lncRNA downstream 347577 1631350 ~ 1631758 (+) False G308441
TU424626 lncRNA downstream 360061 1643834 ~ 1645171 (+) True G308444
XM_022665977.1 mRNA upstream 127548 1084433 ~ 1155289 (+) True relt
XM_022665978.1 mRNA upstream 210314 894860 ~ 1072523 (+) True arhgef17
XM_007257757.3 mRNA upstream 395546 859048 ~ 887291 (+) True p2ry6
XM_022665974.1 mRNA upstream 441150 783475 ~ 841687 (+) False fam168a
XM_022665982.1 mRNA downstream 56694 1340467 ~ 1352751 (+) True LOC103036707
XM_007257759.3 mRNA downstream 69989 1353762 ~ 1361925 (+) True rps3
XM_007257761.3 mRNA downstream 79941 1363714 ~ 1366089 (+) True kctd14
XM_022665983.1 mRNA downstream 93833 1377606 ~ 1401271 (+) True ints4
XM_022665984.1 mRNA downstream 93836 1377609 ~ 1401271 (+) False ints4
TU424184 other upstream 1096762 185337 ~ 186075 (+) True G308090
TU424711 other downstream 733691 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 847306 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 1036118 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 1272554 2556327 ~ 2556569 (+) True G308680

Expression Profile