RNA id: TU424622


Basic Information

Item Value
RNA id TU424622
length 323
lncRNA type intronic
GC content 0.37
exon number 3
gene id G308441
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1631159 ~ 1632002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaaaatatgccccactgaaataaagcagttaacattagctaacccagctaacgttagctaaaacattccccactgaaataaagcggttagcattagctaacccagctaacattagctaaaacattccccactgaaataaagcggttagcattagctaacccagctaacattagctaaaacattccccactgaaataaacagttaacattagctaacccagctaacgttagctaaaacattccccacttaAATAAagtggttagcattagctaacctagctaacgttagctaaaacatttcccactgaaaaaaagtagttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424557 lncRNA upstream 191593 1439258 ~ 1439566 (+) True G308388
TU424475 lncRNA upstream 292818 1337388 ~ 1338341 (+) True G308324
TU424471 lncRNA upstream 347386 1282837 ~ 1283773 (+) True G308322
TU424466 lncRNA upstream 367139 1263139 ~ 1264020 (+) True G308317
TU424461 lncRNA upstream 404336 1226205 ~ 1226823 (+) True G308312
TU424626 lncRNA downstream 11832 1643834 ~ 1645171 (+) True G308444
TU424630 lncRNA downstream 105438 1737440 ~ 1741024 (+) True G308448
TU424635 lncRNA downstream 139902 1771904 ~ 1784753 (+) True G308453
TU424641 lncRNA downstream 157536 1789538 ~ 1823595 (+) True G308457
TU424643 lncRNA downstream 164856 1796858 ~ 1806837 (+) True G308459
XM_022666006.1 mRNA upstream 66695 1461963 ~ 1564464 (+) True pak1
XM_007257762.3 mRNA upstream 182429 1440773 ~ 1448730 (+) True clns1a
XM_015607997.2 mRNA upstream 183148 1440770 ~ 1448011 (+) False clns1a
XM_022665967.1 mRNA upstream 196227 1416342 ~ 1434932 (+) True rsf1
XM_022665983.1 mRNA upstream 229888 1377606 ~ 1401271 (+) True ints4
XM_022665989.1 mRNA downstream 113318 1745320 ~ 1750243 (+) True omp
XM_007257763.2 mRNA downstream 155314 1787316 ~ 1790876 (+) True LOC103029868
XM_007257764.3 mRNA downstream 195902 1827904 ~ 1832674 (+) True serp1
XM_007257769.3 mRNA downstream 202675 1834677 ~ 1847584 (+) False LOC103031553
XM_007257770.3 mRNA downstream 202949 1834951 ~ 1847584 (+) True LOC103031553
TU424184 other upstream 1445084 185337 ~ 186075 (+) True G308090
TU424711 other downstream 385462 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 499077 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 687889 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 924325 2556327 ~ 2556569 (+) True G308680

Expression Profile