RNA id: XM_022665967.1


Basic Information

Item Value
RNA id XM_022665967.1
length 5910
RNA type mRNA
GC content 0.46
exon number 16
gene id rsf1
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1416342 ~ 1434932 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgtgtagtgtgtatatatacagtgtgtgtgtgtgggtaaaaACCCCCGCTGGAAAACATGGCTGCTCCGGCCGCTGCGCCGGCTCTTGCGCCGGCTCTGTGCCCGAGCTTCGCCGTGGTGTGCTCGTTCCTGGAGCGCTACGGAGCCGCGCTGGACCTGCCCGAGCTCTCCTTCCCGGAGATGGAGCGGTTCCTGCGGGACAGATCTGCAGTTCCACAACCTCTTGTCGAGCTCCATGTCAAACTGCTGCGCAAACTGGGCAAGACAGTGTCTTCAGAGAGATGGGAAAAGTATCTGGTCAAGgtgTGTCAGGAGTTTAACAGTACCTGGGCCTGGGAGCTAGAGAGTAAAGGCTACCCTGAGATGCCCATGGAGTGCAAAGCTGATATCCTTAAGtatttatgtgAATGCCAGTTTGATGACAACGTCAAGTTTAAGACAGCAGTCAACGAGGAAGATCCAGACCAGATGCGCTTGCAGCCTATTGGTAGAGATAAGGAAGGGCTGTTGTACTGGTTCCAGTTGGATCAAGATCAGAACGTGCGGGTTTATGTGGAGGAGCAGGATGATTTGGATGGTTCTTCTTGGAAGTGCATTGTCAGGAATAGGAATGACCTGGCAGATATTTTGGAGGCACTTAAAGGCAAGATGGACCCACCAATGACAGACCAGGAGCAACAAGATGGTTCTTCTGGTAATCCAACAGAACAGGAGAAGGAGACGACAGAGAAGATCTGTTCCAGTGATAACATCAAAAACAAGAAGAGAGCTGGCCAAGCAGACTGTTCAGATTCTGAAGAGGACAGCAAACAGATAACcatgaaaaaagaagaagaaagcctgtcaataaatgaaaatattaaaaaggcGACTGTTCCTCTTATTAAACTAAAAGAAGAGCGAAAGGATGAGCTTAAAGTGAAGCCTGTTGTAACCGAAAAGCCACCTACATTAGAGCATCCTCTTGTTATAGATAATAGAGTTAGCACCATTAAGAGCCTGGTGAAGGATGAGCCCAGGGACTCTCCGAGACACTGGAACGCTATCTCCGTTGTGAAGTCTCCGGGCTCTCTGAAGCAGGAACTTCCAACAAAGACTGAGGCCTTCAGGGACAAGAAAGCTGAGGACGTGGAGAGGGCTATAAAAAATGACCAGCAGGCGAAGATACCTCTGAAAAAGAGGGAGCTGAAGAGGAGCGACAGTTACGACAGCAACCATTACAGCAACATAaaccacaataataataacgttAGCAACAACGGGAGCGTTAGCCTTGGGGGTATAATCGTTCGTAATCCAGCGGTTTTGGCACTAAGTGATCAGCAGGCTGGGCGTAACATGGAACTTGGTGGcgaaaataagactttaatgCCTATGGCTCCTTGTATAGGTACGGGAAACCTGCTTAAACCAAGTTCTGAACCAGCTACGAGAGAGCATTACGTAGGTATTGGAGTAATTATGGGCCCGGTTGAGAGAAACAGAGCGTTTGACCAGCCTGAGAATTTGACCACTCCTACAAAGGACCGAAACGGCCTTCACGGAGATGGTAAGATCAAGTTTAAAGCTGAGATGACACCGGCTGAGAATATAAGACAGTCTGTTCTAGTAAGAAAACCTAGTCTTACACCTGAAAATTCCAGTATTCATCATTCCAGCATCAGTGAATCTAAAATTCATAAAATAGAGCAAGCCGATTGTGAGGATTCAGCTCCCGGAAAGGTTTCTGTAGGTGATTCGGATGAACCTTTGAATTTTGCAATGCCAAAAGTTAGCGAAACAGCCGTTAATGAGGTGAAATCTGTGATAAAAGTTATTCCAATTGAGCAAAGCTCACCTAAAGCAGTGGCCACACTTGAAGAAGCGGTCACGTCATCCACATGTGGGaatatagaagaagaagaagaagaagaagaagaggaggagctaACGGAAAAGAAGAAGCCTAAAATGACAGAGCAAACGCCGCAAAGTGGACAAGTGGAAGCTATGcaagaaaacaaaggcaaaggATACAAAAGCTCAAGGAAACGAAGATCAGAGAAGACAAAGGTCAAAATGCAACCAGGAGAAGCTCCGAATAAGCTTCGCTGTGAAGGTACGACAAATAACGACGATGAAGAAGTGTCGTCAGAGTTACAAAAAGAGGGAATTCGCCTAAAAATCAAGATCCCGCTGCACAGACGCACGCCCAAGCTCCAGCTGGAAAGAGCCAGGGACGACCTGCAGGCCTCAGACCGACGTTCACTCCGGAGGTCAGCGAGAATCTGCAGGCCCAGTCCAAAACTGGCCGAAATTCAGGTCAGGAAGCGCGGGAAGAAGCAGACGATGCCCCCTGCAGCACGCGAGGTCGAAGAGCACAAAGATGATGAAGCAGAGAAAACGCTTCCTAAGAGGGATGTTGCAACCAACCAGGGTCCGATCAAGTCTGCAAGGGGTAAGCGGCGGCACCGGCGAGCTCGCTGGTCaaaaaccaaactgaaaaagCCATGCAGAGTGGAAGTGGCTCCACAGGAAGATGTGGTGCCGGAGAATAAACCGGAGGGAGCGGAGGAGAAAAGCGAGTCAGAGTCCGAGCCCTCGGAAGAAGCTCCGCCCGAAGACGCCTGTAAACACTGCAGCCTCCCGAACCATCCTGAACTGATTTTGCTGTGTGACCTGTGTGACAGTGGATACCACACGGCCTGTCTGAGGCCTCCTCTTATGATCATCCCTGATGGAGAATGGTTCTGTCCTCCCTGTCAGCATaAGCTGCTGTGTGAGAAGCTGGAAGAGCAGCTGCTGAATCTGGATACAGCGCTGAAGAAACGTGAACGAGCTGAGAGGAGGCGAGAGCGTCTGGTGTATGTGGGCATCAGTGTGGAGAATATTATACCCAATCCTGATGCTGAAGTTGAGGATAAAAAgcaggagaagaagaaagatgCAAAGAAGAGTAAAAACCTGGAGAGGAGATCCACACGGCAGAGAAAGTCTATTAGCTACAGGTTTGATGACTTTGACGAAGCCATTGATGAAGCAATAGAGGAGGACATACAGAACTCAGAGGAAGGAGGTCCTGTGGGGGGTCGTGGTAAAGATATGGCCAACATCACGGGCCAGAAGGAGAAGGAAGTGGATAAAGAGAACCGGAGGCCTGTGAAACCTGCTGCCCCTCGCAGGAGGAAACGCCGCCGGCGACTCAACGACCTGGACAGCGACAGCACTCTGGAGGACGAGGAGAGCGAGGATGAGTTTCACCTGAGTGACAGTATGGAGGAGGAAGATTTTGTGGTGTCGGGTGACGATGCAGCGAGTGATGGGGACGCTGCCTCGTGGGACGGGAGCGACTGGGGCAGCGTCACGAGCAGACCTGGCCGTCTACCCCTCCCCAAAAAAACAGCCCGAAACATTCGAAACCAGAAAGTCAAGAAAACCACACGGAAATCCACCAGACGACAGAAAGGATCttcagaggaggaggagctttTAGAaacggaggaggaggaggagatggAAACCGAGGGCTCCAGCGACTTCGACGACAGTGATGTGGACATGAGGAGACGGAGGTCACGGCGACAGAACGCACAGGTTAACTACTGCGAAACCTCCGAGTCTGAGGGGTCACACAAAATCTCCAAACAGAAAACTGCCCAACCACGCCGCAGACGACTGTCCAGCTCCAATAcgTCGGCTGTTTCCAAGGACTCTGAACCAGAGGAGGAGTCTGAGAGGAGGCCGAGGGGGAGGAAACGGGAGTCGACCAGAGAAGACTCCAAACAGAGGCACAAACCGCTAACCCTGAAACGACCCCGGAGTTCAAGCGAGGAACAGGAGGGGGAGGAAACGGGCGAGGAAGGAGAGAGCGAATCGGACGAGGAAGAGCGGCCGGTACGAAAGAGGCTGAACCGCATCGAGACAgacgaggaagaggaggaggaagaggtggAGCGAAGGCCGATGAGAAACGCACACGGAAAACGAAGGAGTGGAGCTAAAGACTTCAGCCAGCTGCCTGCTAGGGCGCCCCCTAGAGGATCGGAGGGTTTATTGCCAAAGCACACGGGCCGACACGGCGGGACTCCTCACGGAAGGCACAACGGCCTGGTTCCTCCGAGGCCTACAGCTCAGGATGaagacgaggaggaggaggatgacctCACGGCCGTTACGGACCTTGTTAACTTTGTTTTTGACAGTGAACAGTTGTCGTGATTGTGCTGAAtagatttaatatataatttttttttctcatggcCTTTCACCAGTGTCCACCGCCCAGGTGGGTTTCCCAGTGTCGGTCACCATAAAcctcctgttttatttttatttttattgggtGTACTGGACCAATACATACGACAGCGCTTTAGGGCCTCTGTTataaagaaaactaaacagTAGACTTTGAGAGTAGAGccataatattttaagaataaagttttaaaataatatttagagaaaaaaatgataaagtgCTATTGCAAAATTTGATGATAATGTGGTATtgctacaagaaaaaaaattatatttcaagctttaaaaataaatgaattaaatgacaACGCTAAAATGGTATTGCTAGCAGGAAAAGTTACAATATTATATCCAGAGAGTTACACAAGTAACATAGTGTTAAAATGTGCAATGCTGAGAATTTTGTAGTTTTAGCATCGGTTTTACCGATCTCCTGGACCAGCAGAAGATTATACTAAGAAAAATCTGGTGCTGGTGGTTTAGGAGTATTTCTTTACTGGTTTATTGCTTTAATGATCTGAAAGTATTACTACCTAAATCCTCAACATCTTAAAAATGACTTACCTGTTAGTattcctctttatttttaaaatattacaattttattcTCAATAAAATTTCAAAtctattctcaaaatattgactttattttcaaaatgttaCGTCTTTATCCTCGAAGtctactatttttatatattttaaacagtggCCCCAACACGCTGTAGTAAATACAAGCTTCCAGAGGAATGCCATTGTGTCTTTTCACGTGATGTCCGAATGCACTCTAGTTTCTTCCTACCATCCCAGCATcacagcatgcacacacacttacacacacacttacacacacacatccatatatacagatatacccAGGTTTAGTACAGGGTCccagtaaaacacatttacagatAGCTGTTCTTCTGAGAGATAAGCACTATGTAATTTAAGGCCAGTAAAACGTCATCTGTATTACAGAGGCTTCTATATTGTCCTATAGAGACACTTTACACTGTACATTTTCAGGCTTGTATGTTACTGCATTTCAGATTGGTGTTTTAGagatgtttttagttttattctctgtaaaaaagaagaaaacaaaaagaaaaaagtttttatatgAAAGAGAGGGTCTATGGGAATCTGCTCAGCAGTTTGAAATTTGACTTTTGTTCTGttgaattgttttaaaattctcAGTAATTATCAGTAATTTTGTTTATTCAGAATCTTGTTCATTCAAAGCTAACTTTAGTGACATTTACTGACACGTTCTGCCATTGGAAAGGtatgaaaatgatttaaaatagtgCCCCGGGATCCGTAAAGGTGCACAGTTTAGTCGAAGCTAATTTATCAAAACAGCTTTACTGACATAGATAGATTTTATAACCACTTTATTGTAACATGCTATGCTTAACGTTAAGTCTTACTGCTGTCTTTTTACAGATTACATTATTTCATTAAGTCCTAAAAGGACTGTACtgaagatatttaaatatatataatttttattatttgcccaAAATTATAGTAAGTCTACGAGGGCGGTCCATTTGATAcactctgtgttctctgtggcACACATTTTCTGATTTGTGGGTCAATTTCAGTTTTCCAGAAGGTTCccggacagggattaagcctagcctTGGATTACACAGCAT

Function

GO: NA

KEGG:

id description
K22768 MBD9; methyl-CpG-binding domain-containing protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424475 lncRNA upstream 78001 1337388 ~ 1338341 (+) True G308324
TU424471 lncRNA upstream 132569 1282837 ~ 1283773 (+) True G308322
TU424466 lncRNA upstream 152322 1263139 ~ 1264020 (+) True G308317
TU424461 lncRNA upstream 189519 1226205 ~ 1226823 (+) True G308312
TU424455 lncRNA upstream 190877 1195576 ~ 1225465 (+) True G308307
TU424557 lncRNA downstream 4326 1439258 ~ 1439566 (+) True G308388
TU424622 lncRNA downstream 196227 1631159 ~ 1632002 (+) True G308441
TU424621 lncRNA downstream 196418 1631350 ~ 1631758 (+) False G308441
TU424626 lncRNA downstream 208902 1643834 ~ 1645171 (+) True G308444
TU424630 lncRNA downstream 302508 1737440 ~ 1741024 (+) True G308448
XM_022665983.1 mRNA upstream 15071 1377606 ~ 1401271 (+) True ints4
XM_022665984.1 mRNA upstream 15071 1377609 ~ 1401271 (+) False ints4
XM_007257761.3 mRNA upstream 50253 1363714 ~ 1366089 (+) True kctd14
XM_007257759.3 mRNA upstream 54417 1353762 ~ 1361925 (+) True rps3
XM_022665982.1 mRNA upstream 63591 1340467 ~ 1352751 (+) True LOC103036707
XM_015607997.2 mRNA downstream 5838 1440770 ~ 1448011 (+) False clns1a
XM_007257762.3 mRNA downstream 5841 1440773 ~ 1448730 (+) True clns1a
XM_022666006.1 mRNA downstream 27031 1461963 ~ 1564464 (+) True pak1
XM_022665965.1 mRNA downstream 150530 1585462 ~ 1634209 (+) True LOC103038299
XM_022665966.1 mRNA downstream 150530 1585462 ~ 1634007 (+) False LOC103038299
TU424184 other upstream 1230267 185337 ~ 186075 (+) True G308090
TU424711 other downstream 582532 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 696147 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 884959 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 1121395 2556327 ~ 2556569 (+) True G308680

Expression Profile