RNA id: XM_007257762.3


Basic Information

Item Value
RNA id XM_007257762.3
length 1358
RNA type mRNA
GC content 0.47
exon number 7
gene id clns1a
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1440770 ~ 1448730 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTCTAAATAGTGCACGAGTGCACATATTGGAACATATGTGGCCTGGCTCTCGTGTGGCGCGCATGGAAAGAAACAACACTACGTTACCACACGGGAGAGGAAAGCGAGACTGGGGgatatttaagatttaaaaataagccaTTAAAAATAAGCTAGAGCTTATCTGAGCTCCGAGAGCCCGGTGGCCGCTGTGTGAATAGCAGCACTGCGCGATTTATAGCTTTTCTGCATTTTTCGTAGCTATTTTTACCAGCTTAAGAAGCAAAAACAGGTCAGATAGCTAATAAACTAGCTCTCAATAGTGTGAGTAAACGGCTGGCTGAGTGGGCACACAGCCCAGGCAGaggtgttttagtgtttttagggGGTAAATATTAAGTATGGTTCTGTTAAAAGGTTTGGTACCTCCTGGTGACGGTGTTCGGCACCAACAGGCCGAGACTTCGGCAGTTTTGGACGGGAAAAGACTCGGAACAGGAACCCTCTACGTAGCAGAATCgcGTCTGTCGTGGCTGGATGGATCAGGGATGGGTTTTTCGCTGGAGTATCCCACCATCAGCCTCCACGCAATCTCCCGAGACGTCAGCGCTTACCCACAGGAGCACCTGTATGTGATGGTTAACAAAAAACTTGATGATGAAAATGAAGCAGAGATGCAGGAACGAGCTCCAGATGATGAAGGTGAAGAAGAGAGTGATAATGATGACGATGACGAGGGAGTCATCACAGAAATCAGATTTGTTCCCAGTGATAAAGCTGCATTGGAGGCCATGTTTTCTGCGATGTGCGAGTGCCAGGCGCTGCACCCCGACCCGGAGGACGAAGATTCGGACGATGATTTTGAAGGGGAGGAGTATGACGTGGAGGAGGCAGAACAAGCTCAGGGGGATATACCCACATTTTACACCTATGAGGAGGGTCTGTCCCAGCTGACGGTGGAGGGTCAGGCCACTCTGGAGAGGCTGGAGGGGATGCTGGCCCAGTCCGTAGCTGAGCAGTTCCACATGGCTGGAGTCAGAACTGACGAGCCCTCAACTGGGTTTGAAGATGGAATGGAGGTGGACTCGAACTCTGCAGAAGCTGGACAGTTTGATGATGCTGATGTGGATCACTGaTAAACCATGTTTCCCCAGCACAAGCTGAAGCACTTCAGGTCACCACAGGTCACTTTTAAGTATATTAATGCCTTCTGTGGAACTTTCTGGGCTTTTGTACATTGAGACCTAGGTATCCCCAGAGCCAAAAACATCATTTCTGCTTCTGATGTTGTGTTTTGTACTTCTCATTTAGACCAAATTGTAAAAGCAGTGATATTTGTAtcaagtattaaaataaaatagtttttttgtacAAAGAA

Function

GO: NA

KEGG:

id description
K05019 CLNS1A; chloride channel, nucleotide-sensitive, 1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424557 lncRNA upstream 1207 1439258 ~ 1439566 (+) True G308388
TU424475 lncRNA upstream 102432 1337388 ~ 1338341 (+) True G308324
TU424471 lncRNA upstream 157000 1282837 ~ 1283773 (+) True G308322
TU424466 lncRNA upstream 176753 1263139 ~ 1264020 (+) True G308317
TU424461 lncRNA upstream 213950 1226205 ~ 1226823 (+) True G308312
TU424622 lncRNA downstream 182429 1631159 ~ 1632002 (+) True G308441
TU424621 lncRNA downstream 182620 1631350 ~ 1631758 (+) False G308441
TU424626 lncRNA downstream 195104 1643834 ~ 1645171 (+) True G308444
TU424630 lncRNA downstream 288710 1737440 ~ 1741024 (+) True G308448
TU424635 lncRNA downstream 323174 1771904 ~ 1784753 (+) True G308453
XM_022665967.1 mRNA upstream 5841 1416342 ~ 1434932 (+) True rsf1
XM_022665983.1 mRNA upstream 39502 1377606 ~ 1401271 (+) True ints4
XM_022665984.1 mRNA upstream 39502 1377609 ~ 1401271 (+) False ints4
XM_007257761.3 mRNA upstream 74684 1363714 ~ 1366089 (+) True kctd14
XM_007257759.3 mRNA upstream 78848 1353762 ~ 1361925 (+) True rps3
XM_022666006.1 mRNA downstream 13233 1461963 ~ 1564464 (+) True pak1
XM_022665965.1 mRNA downstream 136732 1585462 ~ 1634209 (+) True LOC103038299
XM_022665966.1 mRNA downstream 136732 1585462 ~ 1634007 (+) False LOC103038299
XM_022665989.1 mRNA downstream 296590 1745320 ~ 1750243 (+) True omp
XM_007257763.2 mRNA downstream 338586 1787316 ~ 1790876 (+) True LOC103029868
TU424184 other upstream 1254698 185337 ~ 186075 (+) True G308090
TU424711 other downstream 568734 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 682349 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 871161 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 1107597 2556327 ~ 2556569 (+) True G308680

Expression Profile