RNA id: XM_007257763.2


Basic Information

Item Value
RNA id XM_007257763.2
length 1238
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC103029868
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1787316 ~ 1790876 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAACTGCAGCAGAACGTCTGTCTGACAGCACTGAGGCAGGAGGCAGAAATGATTAAGCTGAGGAACATGTCTGTAAGTCTGCTCCTGCTCTGGATGGTAGTGAACATCCACACTGCTGCCGGATCTGCTGGAGAGATTCTCAGTGAACTCAGTGAGATAAACTCTGAAAGACCACTAAACATCAGACCTGAGGTCAGTGTGGATGTCTGTGTGGGATGTGCTGCGGATCTACAGTGTGACGAGAGCAGtgaagGATTGGTGAAGTTGTGGCAGACCCCCTTTGGATCATTTGGAAATGGGCTGTTTTTTAGAGAAAACGACCCAATTAACATAAATAACAGAACACTGAGAATCCCAAGAGCCACTTTCAGCCATATTGGACTCTACCACTGTCGAATGGTGGACAACAGAGGAACAACAGTAATTTCATACAGAGTGAATGTGGTGGATAAAGACATAAACGGCCCGGCAAGACCGAGATTAGCCAGAGAAGCCCAGGAGACAGGAGGACATGAGCTGGCATCGGGTGTGGTACCAGCAGTGCTGGTGTCATTTATGGTCGCCTTCACCCTTGGCGCGTTCAGCAGATCCTACGTCATCAAGTGCCTCCAAAAAACAGAGGCCAGGATGCTTCCGAAACGAAGCTTTCACTCACGCAGAGCAGCTGGCATTGGTCCATTCAGAATGACCAGCAGGATGTCCTCCTTTTTTAAAGATTCTGGTGCTTTAAAGGCATCTAGACCCAATAAATCTCCCCCAAAATGGTTCTGGTCCAAGAAAGACAACCACGAATCTACAGTTGAGGAGATTGAGGTTGTAGATGAAGCACAAACCAATCCAGAACCAGATCTACAACCAGAACCAGAGCATCAAGACGAAGAACCCTCTACCATACAACCCAAACGCAGAAGTAGAGTCATTAAACTTTACAACTACGATGATGAGGGTAAGAGATTCGACCATCTCACAGATCCGGAGGTGGTGATGTTGGAGCAGGAGGAGGTCGAACCCAAACCCAGACTCAGAGTGATGTCTCTGACCCGACTCAGCACCATCATGAGCCAAGTGGACACTCCAGATCTGTCTACATACAGAAGATCACGAGATAACACCCCATCTAAACCAGATGAGCCTCCTCAGGATTAGTTCTGGAGGGTTAACTGATTaatcaaatgtaatttaataatttaattaatcatattactgttttaatgcaattttcaaaatggaaaaatcaa

Function

GO: NA

KEGG:

id description
ko04146 Peroxisome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424635 lncRNA upstream 2563 1771904 ~ 1784753 (+) True G308453
TU424630 lncRNA upstream 46292 1737440 ~ 1741024 (+) True G308448
TU424626 lncRNA upstream 142145 1643834 ~ 1645171 (+) True G308444
TU424622 lncRNA upstream 155314 1631159 ~ 1632002 (+) True G308441
TU424621 lncRNA upstream 155558 1631350 ~ 1631758 (+) False G308441
TU424643 lncRNA downstream 5982 1796858 ~ 1806837 (+) True G308459
TU424650 lncRNA downstream 26184 1817060 ~ 1819101 (+) True G308465
TU424653 lncRNA downstream 37042 1827918 ~ 1832674 (+) False serp1
TU424657 lncRNA downstream 63765 1854641 ~ 1891799 (+) True G308470
TU424664 lncRNA downstream 72022 1862898 ~ 1934118 (+) True G308474
XM_022665989.1 mRNA upstream 37073 1745320 ~ 1750243 (+) True omp
XM_022665965.1 mRNA upstream 153107 1585462 ~ 1634209 (+) True LOC103038299
XM_022665966.1 mRNA upstream 153309 1585462 ~ 1634007 (+) False LOC103038299
XM_022666006.1 mRNA upstream 222852 1461963 ~ 1564464 (+) True pak1
XM_007257762.3 mRNA upstream 338586 1440773 ~ 1448730 (+) True clns1a
XM_007257764.3 mRNA downstream 37028 1827904 ~ 1832674 (+) True serp1
XM_007257769.3 mRNA downstream 43801 1834677 ~ 1847584 (+) False LOC103031553
XM_007257770.3 mRNA downstream 44075 1834951 ~ 1847584 (+) True LOC103031553
XM_022665980.1 mRNA downstream 285725 2076601 ~ 2112984 (+) True cstf3
XM_022665994.1 mRNA downstream 431093 2221969 ~ 2236883 (+) True eif3m
TU424184 other upstream 1601241 185337 ~ 186075 (+) True G308090
TU424711 other downstream 226588 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 340203 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 529015 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 765451 2556327 ~ 2556569 (+) True G308680

Expression Profile