RNA id: TU424657


Basic Information

Item Value
RNA id TU424657
length 3422
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G308470
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1854641 ~ 1910645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaaaaaaaaaaaaaaaaaaaaaaaaaaaagtccctgAGAGATGTTGGGGGACCCCTCTGCTGCAGAGGCTCACTTAGGCCCCGTTCACTCTTGGCATTAATATGCATTCTGGGAGATCTGATCACAAATTTACGCTTACTCTGCGAGTTTGGTActtttgtttgagtttaaaagctgttttaaaaCCTGTGAACATTTAGTGGTTTGCTACAGTTCAACTCCGGTGTGGTAGCTATCTGCTCCCTGTGCTGCGTGTAGGGTTAAGTGATTGGTTCACGATactctcctttttctttttcttcatcagTTAATCCAAGATAGGGTACACACAAGAGTGAGGGTTCTGTAATAAGCTCAGCTTtgtggagtgagtgcaggtactGACAGCATGGTGATCAATGTAAATCTTGTGCTGGCatgcatggaaaaaaatatttttatactagACCAGCTGCTGGTTTTGGAGGCTCCTCAGTTCCTGCATGGTGAAACGTAGAGCTTCCTTAAAGTAAGAAGTGAACGGATGAAGCTTTACCGATCCCACACAagttcttgtgtgtgaaaacaaaccagagataATAGTTAACAGCCCAAATCCAGATGAGACACTTTGTTTCACTTGTGCAGCACTAGCCTTAACTATCACCTCTTTCCATTAGCTTGTTTATTGTAGTGTGCGCTCAGCTAACCTGCACAGACGGTGGATGGTAATTTATGGTCATTTATAATCAGATCACCCAGGATTCATGTTAATACCACGTGCAAATAGGGTCTTGCATCCATATACAACCGGATCAGATAAGCTTCGACTAAAAATCCCGATGCAAAATCAGAAAAGAAGAGGCTTCTGTTCTCTACGTCAGTCTGGCAGTTCATTCTTACCTCTTGTTTTATGGTGTATATAATACgtatacacatacacacgtacAAACACAGCTGGAATTATTCTAGTGTTAGTAGACTTTGTTGCTTTAAGttcttatttttctcattttctgagaaaaaaaaacaatttgatcACAACGATAAACTTGAACGGACAACTTTTTCTCATTAGcctttaacaaaaatattactCGAGGCAAAAAATACAGCGACAGAGAaggaaataaagtatttaagtgGTACAAGTTGGGGGTAAGAGCTTTGTAATCTTAACagctacacaaaaaaacactgcttacAGACTACATTGACTACACCCAGAACTGTCACACTTGGGGGTGGTAGTGTTAAGTTTAAGAAggggaggaaagaaaaaaaaaaaagcctaatgtgtttaaatgaaaaGGGAGGAAAAAATGGGTTGTAGTATTTGTTGGTATTCAAATATcttgaccacacacacaccaacatacTCACATACAGACGTACATACGAACACACACTTGAGTATAAATGAGAAACCTGGTgagaaagaggaaaataaagaaattaaagccATATGAACACTGATGAGGCCAGGTTTACAGATAATCACTTAATTAGGATGAATGTGCCCCCTCTATATTTTCCAGCAGTCAGTAGGGGGTCAGGAATGTATTTGGTTGAAtcagaagatgaagaagaagaagaatcagCGGGCTAATGGAAAAGGGGCCTCGTCTTATAGCAGGTAATTCATTACGTATATAAAGAAGGGGCAGATATTCTTTGTTATAACCCATAAAACCATGTTTAAACTCTCCACAGGACAATTTCTGCATTTATACGCATTAATCTGGCTTTGAAATTCGAACGATTTAATTTCTTTTAGCTTGTGTTTCTCATTGTATGTTGGGATGTGCGTTTTTAGTGTGAATGGAGGCCTACAGGAAGCAGAGGAGAGGAGGACAGAAGAGAGGATGAGGAGGAAGCATCACTCCTCCAGCCTTCCATCTCTCTATTCCAGCGAGGGCTTGAAGTTGGACTTGATGACCACCTTCACCTCCAGCTTGGTGCGGCCCACCTCTCTGACCAGTGGGATTACACGGAACGGCAAAATAATGTCCTTAGTGGTGCGGTACCTACAGCAAGGACACGGGCAGGACAGAAGTTCTTAAGCATGCACAAAAGGACACAGGGTGTACATCCATGCATTCATACATACTAAAGGCATAAAATTGCATCAGTGCAGTATTTACAGCACTTGTTTCCATATTtagcataataatacaatataatattttaacaaaatgtgCATTCATACTAGAGCTGGGAAATACATCATATTTATCAACatattataaaatactttattcaatatagaaacaaataacatttgtatatattatataaatgtgaatttgctgtgccctcaaaaaagttaacacagccattaatgtttAAACCACTGACAACACAAGTGAGTGCACACCTAAGTGAAAATGGCGAAATTGCGTCCAAAATGTAATTATCACAGGTTTTCCAgatggttccagtaatccatgctCTTTAACTGCTTGTCTTCAGTAAACTGTTTGCAGGGTTTCTTGGGCATCAGCTTTAGAAGAGGCTTCCTTCTAGGCTAGTTTCATGCAGACAGAGTTGATGCCTTAGTTTGTAGcatatggtctgagcactgcaggCTGACCTCTAACttcttcaacctctgcagcaatgctggcagcactcatgCGTCTATTGTTTTAAAGCCAACCTTTGATTATTACGCTGAACAAGTGATCTCAACTTCTCTGGTCGACCCTGCAAAGGCCTGTTCTGAGAGGAATCTGTTCTAGAAAACTGCTGTATGACCTTGTTGGCTATCGTGATGCATCTCAGTCTTAGGGTATTAGCAAACATTTAACAGTATAGGTCATCTTTGTGCAGAGCAACACTTCTatgagagttctttgccatgaggtgccatgttgaatatccggtggccagtatgagagaaCTGAACCCAAAACAACAAATTGTACAGACCTGTTCCTCATTCACACCTAAAACCTTCTAACACTaatgagtcacatgacaccaGGAAGGGAAAATGACAGACATTTATGGCTGTGTGtcaagttattttgagggcacagcaaatttacactgttatatctgtacactgactactttacacttTATCATAGTGTCATATCTCCaatgttgtcccatgaaaagaaaGACATAACAAAATATCTACACAAATGTAAGGGGTGCGCTCACTTTTGAGAGACTGAGAAAAAGCACTGACCTCATAAGCTCGTACTCTCCGTCCGGTGGGATGAAGCTAATACTGCGCTCTGAGTCGAACTTGCTGAGTCGTACACACTGGTGGAAGGTGCAGTCATCAATGGCTATAGACTGTTTCCCACTACTGCAGGGAACAGAAGAGGAgacacatatatacaaacactGAATTCTGAAAAGCATTACATCACACAGCACAGAACTGCTTCAAGACTACAGCACTGGATATGtgtttacgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424653 lncRNA upstream 21967 1827918 ~ 1832674 (+) False serp1
TU424641 lncRNA upstream 31046 1789538 ~ 1823595 (+) True G308457
TU424650 lncRNA upstream 35540 1817060 ~ 1819101 (+) True G308465
TU424643 lncRNA upstream 47804 1796858 ~ 1806837 (+) True G308459
TU424635 lncRNA upstream 69888 1771904 ~ 1784753 (+) True G308453
TU424706 lncRNA downstream 105434 1997233 ~ 1998747 (+) True G308501
TU424730 lncRNA downstream 195309 2087108 ~ 2088169 (+) True G308521
TU424771 lncRNA downstream 303192 2194991 ~ 2195304 (+) True G308552
TU424768 lncRNA downstream 307041 2198840 ~ 2207792 (+) True G308549
TU424884 lncRNA downstream 354512 2246311 ~ 2265533 (+) True G308640
XM_007257769.3 mRNA upstream 7057 1834677 ~ 1847584 (+) False LOC103031553
XM_007257770.3 mRNA upstream 7057 1834951 ~ 1847584 (+) True LOC103031553
XM_007257764.3 mRNA upstream 21967 1827904 ~ 1832674 (+) True serp1
XM_007257763.2 mRNA upstream 63765 1787316 ~ 1790876 (+) True LOC103029868
XM_022665989.1 mRNA upstream 104398 1745320 ~ 1750243 (+) True omp
XM_022665980.1 mRNA downstream 184802 2076601 ~ 2112984 (+) True cstf3
XM_022665994.1 mRNA downstream 330170 2221969 ~ 2236883 (+) True eif3m
XM_022665992.1 mRNA downstream 1102269 2994068 ~ 3009972 (+) True pex16
XM_022665993.1 mRNA downstream 1127360 3019159 ~ 3035820 (+) True LOC103038331
XM_022665995.1 mRNA downstream 1178437 3070236 ~ 3107407 (+) True cep126
TU424184 other upstream 1668566 185337 ~ 186075 (+) True G308090
TU424711 other downstream 125665 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 239280 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 428092 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 664528 2556327 ~ 2556569 (+) True G308680

Expression Profile