LOC103038299 (gdpd4a,LOC108431176,LOC108264809,LOC107735911,LOC107660699)


Basic Information

Item Value
gene id LOC103038299
gene name gdpd4a,LOC108431176,LOC108264809,LOC107735911,LOC107660699
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1585462 ~ 1634209 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665965.1
GTGGGGTTAGAATAGAAAAATAGCGTTGCAGAGCTCGGCGCCACCCGTCTCCAGTCCAGCCTGGGAAACAGGGCGCGAGGATCCAGCCGCGAGCCAGCGCgtctccCGCAGTGTTGATCGTCCCACCTCCAGCCTCCCTCTCGCTCTCGTGCTCttctgttcagtgtgtgtgaggtttccTCCATGCTGGTGTTTAACGGCTGATCCATGGGCCGCTCTCCGGTCAGCTTGTCCAGACTGAAGCTGGGGAGGTTAAAGGTCGTGCGGCGGCAGCTGCTACAGCGCTATGAACACCAGCCATTCGTCTCCTGCCTGGCCGGACTCTACGGCTGCCAGTGGAGACGATACCAGAGGGCCAAAGCCCAGCCTGGAGAGTGCTGCTGCAGCCGGTTGGAGTGTGGCAGTTTCGGCCTCCTCATCGTTACGTTTTTCCTGACGCTGGTGTTCCTGTATTTCTGGAGCGAGGCTCAGAATGACTACAATGATTTTGACTGGTTTAACTTCGGGAACCTGGGCTTTTGGTTCCCGTGGTCCctggtgctgctggtggtgTCTGCAGCACTGTTCACCTACGTCGCCCTCCTGCTGGTTTTAGCAGTGTGCCTTCTCTCTGAAGGTCAGAGGCTGTATCTACACTGGAGCCACAAgATTGGTATTCTGGTGACCCTCACCTTCTCTATCAGTGCCACAGCGGTGCTCTCTGATTTATGGAGCAAAGAGTGGAAAACGCTGCTCCTCTCCTTTCAGGTCACAGCACCTTTTCTACATGTGGGCGGAGTCTTGCTAATGACCCTGCTGTCCTGGCCAGTGGCCTTACACTTCTTTCGCATGAGTAAGAGAGTGAGGCAGGTAATGATCCTGGGTCTGTACCTGGCAGTGCTGTTCGCTCTGTATCTGGTCCCGCTGGGCATGTACTCCCCCTGCATTAAGGAGGAGGGCACGCTGGGCCCCGCGCCCGTCCTCATCGGGCACAGAGGAGCTCCCATGctcGCACCTGAGAACACACAGCTATCCTTCCAGAAGGCTGTGGAGGCTGGAGGGGAGGGGCTGGAGACGGACGTTACTATAAGTTATGATGGCGTGCCCTTCCTCATGCATGACACCACACTGAGGAGGACCACCAACATACGGGAGGTCTTCCCCAACCAGACCAACACCCCGGCAGCCATGTTCACCTGGGCCGAGCTGGAGATGCTTAGCGCCGGAGAGTGGTTCCTTGGGAGAGATCCGTTTGGTACGGCCTCCTCTCTGGACCCGGAGGAGCGAGCTCTGGTCCAGAACCAGACGGTTCCCACGCTGAAGGACTTTCTGGACCTGGCTGCTCAGTACGGCCGGCTGGTGATCTTCGACCTTCGCCGGCCACCGCAGGGCCATCCGTACCGAGACACCTGGATCACCAGGACTCTGGAGGTCCTGCACAACGAGTCCCACATCAACTCCAGCCAGgtgctgTGGTTGCCAGGAGATCAGAGGGATGTGGTGCAGGAGATGTATCCAGAGCTGCAGCAGACCTCCGGAGACCGAGCCTCCATcgaggagctgcaggaggagcaCATCGTCCGCCTCAACCTGCACTACAGCTCCATGAGCCAGGACCAGATCAGTAAATACGCCTCGGTGAACATCAGCACTAACCTGTATGTGGTCAGTCAGCCGTGGCTGTACTCTCTGGCCTGGTGTGCTGGAGCTCAGTCCGTCACCACCAACGCCCTGCACCTGCTCAAAAACCTGCACAAGCCCATCTTCCTGATGACTCCACAGGAGTACAGCATGATGTGGATCCTCACTGATATCATCTCTGCACTTCTCATCATGGCTGTCTTCATATTCCACTGGTGGCGTGAGAGAGGCCTGCCGTTCTGGTCAGGCAGCAGGCAGGTGCATGAGAACGGACCCTACAGCAAGTTCAGGACTGAACTGAGCGACGTGTGGTCCATCTCGAGCCTCAGCGTCCGAGGGGAGGGGGCGGAGCCAGCCAACCTCGCCCAATTTACCCACCATCTCCGAGGAGCCGCCGGTCTGAGCCCGGCCGTGTGGGGGGAGGAGCTCCAGAGGGGTCGGAGGTCTCAGCAAAGACTGTGTGCTGATTATCTGCTGCCCACTCTGAGACACTCATCCGTCCAGTCCGGATCCATCAACCACGCATTCGCTTCCAGACTGACGCAGCGCGCGTGACATCATATGCAAAGTGACTGAACACGGAGCAAC
>XM_022665966.1
GTGGGGTTAGAATAGAAAAATAGCGTTGCAGAGCTCGGCGCCACCCGTCTCCAGTCCAGCCTGGGAAACAGGGCGCGAGGATCCAGCCGCGAGCCAGCGCgtctccCGCAGTGTTGATCGTCCCACCTCCAGCCTCCCTCTCGCTCTCGTGCTCttctgttcagtgtgtgtgaggtttccTCCATGCTGGTGTTTAACGGCTGATCCATGGGCCGCTCTCCGGTCAGCTTGTCCAGACTGAAGCTGGGGAGGTTAAAGGTCGTGCGGCGGCAGCTGCTACAGCGCTATGAACACCAGCCATTCGTCTCCTGCCTGGCCGGACTCTACGGCTGCCAGTGGAGACGATACCAGAGGGCCAAAGCCCAGCCTGGAGAGTGCTGCTGCAGCCGGTTGGAGTGTGGCAGTTTCGGCCTCCTCATCGTTACGTTTTTCCTGACGCTGGTGTTCCTGTATTTCTGGAGCGAGGCTCAGAATGACTACAATGATTTTGACTGGTTTAACTTCGGGAACCTGGGCTTTTGGTTCCCGTGGTCCctggtgctgctggtggtgTCTGCAGCACTGTTCACCTACGTCGCCCTCCTGCTGGTTTTAGCAGTGTGCCTTCTCTCTGAAGGTCAGAGGCTGTATCTACACTGGAGCCACAAgATTGGTATTCTGGTGACCCTCACCTTCTCTATCAGTGCCACAGCGGTGCTCTCTGATTTATGGAGCAAAGAGTGGAAAACGCTGCTCCTCTCCTTTCAGGTCACAGCACCTTTTCTACATGTGGGCGGAGTCTTGCTAATGACCCTGCTGTCCTGGCCAGTGGCCTTACACTTCTTTCGCATGAGTAAGAGAGTGAGGCAGGTAATGATCCTGGGTCTGTACCTGGCAGTGCTGTTCGCTCTGTATCTGGTCCCGCTGGGCATGTACTCCCCCTGCATTAAGGAGGAGGGCACGCTGGGCCCCGCGCCCGTCCTCATCGGGCACAGAGGAGCTCCCATGctcGCACCTGAGAACACACAGCTATCCTTCCAGAAGGCTGTGGAGGCTGGAGGGGAGGGGCTGGAGACGGACGTTACTATAAGTTATGATGGCGTGCCCTTCCTCATGCATGACACCACACTGAGGAGGACCACCAACATACGGGAGGTCTTCCCCAACCAGACCAACACCCCGGCAGCCATGTTCACCTGGGCCGAGCTGGAGATGCTTAGCGCCGGAGAGTGGTTCCTTGGGAGAGATCCGTTTGGTACGGCCTCCTCTCTGGACCCGGAGGAGCGAGCTCTGGTCCAGAACCAGACGGTTCCCACGCTGAAGGACTTTCTGGACCTGGCTGCTCAGTACGGCCGGCTGGTGATCTTCGACCTTCGCCGGCCACCGCAGGGCCATCCGTACCGAGACACCTGGATCACCAGGACTCTGGAGGTCCTGCACAACGAGTCCCACATCAACTCCAGCCAGgtgctgTGGTTGCCAGGAGATCAGAGGGATGTGGTGCAGGAGATGTATCCAGAGCTGCAGCAGACCTCCGGAGACCGAGCCTCCATcgaggagctgcaggaggagcaCATCGTCCGCCTCAACCTGCACTACAGCTCCATGAGCCAGGACCAGATCAGTAAATACGCCTCGGTGAACATCAGCACTAACCTGTATGTGGTCAGTCAGCCGTGGCTGTACTCTCTGGCCTGGTGTGCTGGAGCTCAGTCCGTCACCACCAACGCCCTGCACCTGCTCAAAAACCTGCACAAGCCCATCTTCCTGATGACTCCACAGGAGTACAGCATGATGTGGATCCTCACTGATATCATCTCTGCACTTCTCATCATGGCTGTCTTCATATTCCACTGGTGGCGTGAGAGAGGCCTGCCGTTCTGGTCAGGCAGCAGGCAGGTGCATGAGAACGGACCCTACAGCAAGTTCAGGACTGATCCCTCAGATGTTCGGGGCGTCCGCTGGAACCCCCTGTTCTCTGATGACTCTGTGTGGACAGTAGTCCCCCGTCCCAGGACTCAACCCCCCCGCATGCCCCCCCTCTGCATGGCTACCCTGTGCTGAACTGAGCGACGTGTGGTCCATCTCGAGCCTCAGCGTCCGAGGGGAGGGGGCGGAGCCAGCCAACCTCGCCCAATTTACCCACCATCTCCG

Function

symbol description
gdpd4a Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GDPD4 (glycerophosphodiester phosphodiesterase domain containing 4).

NR:

description
PREDICTED: glycerophosphodiester phosphodiesterase domain-containing protein 5-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665965.1 True 2208 mRNA 0.58 16 1585462 1634209
XM_022665966.1 False 2133 mRNA 0.59 17 1585462 1634007

Neighbor

gene id symbol gene type direction distance location
pak1 pak1 coding upstream 20998 1461963 ~ 1564464 (+)
clns1a clns1a coding upstream 136732 1440770 ~ 1448730 (+)
rsf1 rsf1,LOC102310057 coding upstream 150530 1416342 ~ 1434932 (+)
ints4 ints4 coding upstream 184191 1377606 ~ 1401271 (+)
kctd14 kctd14 coding upstream 219373 1363714 ~ 1366089 (+)
omp omp,ompa,LOC107660685,LOC107735103 coding downstream 111111 1745320 ~ 1750243 (+)
LOC103029868 NA coding downstream 153107 1787316 ~ 1790876 (+)
LOC103031553 pcyt1a,LOC108440592,LOC108264716,LOC107091881 coding downstream 200468 1834677 ~ 1847584 (+)
cstf3 cstf3,LOC107671440 coding downstream 442392 2076601 ~ 2112984 (+)
eif3m eif3m,LOC107602127,LOC107671036 coding downstream 587760 2221969 ~ 2236883 (+)
G308388 NA non-coding upstream 145896 1439258 ~ 1439566 (+)
G308324 NA non-coding upstream 247121 1337388 ~ 1338341 (+)
G308322 NA non-coding upstream 301689 1282837 ~ 1283773 (+)
G308317 NA non-coding upstream 321442 1263139 ~ 1264020 (+)
G308312 NA non-coding upstream 358639 1226205 ~ 1226823 (+)
G308444 NA non-coding downstream 9625 1643834 ~ 1645171 (+)
G308448 capn5,LOC108264643,LOC106535735,LOC107713096,LOC107665347 non-coding downstream 103231 1737440 ~ 1741024 (+)
G308453 NA non-coding downstream 137695 1771904 ~ 1784753 (+)
G308457 NA non-coding downstream 155329 1789538 ~ 1823595 (+)
G308459 dcun1d5,LOC107712802 non-coding downstream 162649 1796858 ~ 1806837 (+)
G308090 NA other upstream 1399387 185337 ~ 186075 (+)
serp1 NA other downstream 193695 1827904 ~ 1832674 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 383255 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 496870 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 685682 2319891 ~ 2338166 (+)
G308680 NA other downstream 922118 2556327 ~ 2556569 (+)

Expression


Co-expression Network