RNA id: XM_022666006.1


Basic Information

Item Value
RNA id XM_022666006.1
length 3178
RNA type mRNA
GC content 0.50
exon number 16
gene id pak1
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1461963 ~ 1564464 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgtgtatgtgtgtgtgtgcgcgtgcatgTCACACAATAGCGAGGATCCGGCAAGTTTAAGGTGAATGAGAGGGGCAGTGCACGCGGAGAGAGGAggtagagagaaggagagaggaggTGGAGAACAAGAAGAAAACCGGATTGGGATTTACAATTCGGATCAGCTCCggtttcagagATTGTCGTGTCGAACGCCCAGCAGTAGAGTGTTGTTCTCAGAGCTGAAGAAAGatttAGCTGCAGCTGTGCATAAGGATGTCTGATAACGGGGAAGTGGAGGATAAGCCCCCCGCGCCGCCCATGAGGAACACCAGCACTATGATGGGGGCCAGCAGTAAAGACCCTGGACCCCTGAACCACAGCTCCAAACCGCTGCCCCCCAACCCAGAGGACAAGAAGAGGAAAGACCGCTCCATCCGCTCCATCCTCACCGGAGGCGGAGACAAGAcCAACAAGAAGAAGGAACGTCCTGAGATCTCTCTCCCATCAGACTTTGAGCACACCATCCACGTGGGGTTTGATGCCGTCACCGGGGAGTTTACCggtaTGCCAGAGCAGTGGGCTCGCTTgctccagacctcaaatatcaCTAAACTGGAGCAGAAGAAGAATCCACAGGCAGTTCTGGATGTGCTGAAGTTTTACGACTCTAAAGAGACGGCCAACAGCCAGAAATACATGAGCTTCACAGATAAAACTCTGGACAGTTACAGCTCCTCCAATGCTGTGAACTCCAAAACCGTGTCGGAGACCCCCGCCGTCGCCACCGTAtctgaggatgaggatgagaaTGAAGCTGCTCCTCCCCCTGTGATCGCCCCCCGACCAGAACACACCAAATCTatatACACTCGCTCAGTGATCGAGCCGCTGCCTCCCGCCCCCACCAAGGATGTGGCCACCTCTCCCATCTCCCCCCCACCGGCCGAGGGCGgcagccccacccccaccccctccaGCACCGCCCCCCGCAGCGCAGACAAAACCCGCAAGAAGAAAATGTCTGACGAGGAGATTCTGGAGAAACTACggagtatagtgagTGTGGGGGATCCTAAGAAGAAATACACGCGCTTTGAGAAGATCGGCCAGGGGGCATCTGGAACAGTTTACACAGCAATAGACATCGCCACAGGACAAGAGGTGGCCATTAAACAGAtgaacctgcagcagcagcccaAGAAGGAGCTCATCATCAACGAGATTCTGGTCATGAGGGAAAACAAACCGCCAACATcgagagatatatatatatatatatatatatatCTGGTGGGGGATGAGCTGTGGGTGGTGATGGAGTATCTGGCCGGCGGCTCGCTGACGGACGTGGTGACGGAGACGTGTATGGACGAGGCTCAGATCGCCGCCGTGTGTCGGGAGTGTCTTCAGGCCCTGGAGTTCCTCCACTCCAACCAGGTGATCCACAGAGACATCAAGAGTGACAACATCCTGCTGGGCATGGACGGATCCGTCAAACTCActgaTTTTGGCTTCTGCGCTCAGATCACTCCGGAGCAGAGTAAGCGCAGCACTATGGTGGGCACCCCATACTGGATGGCCCCTGAGGTGGTGACCCGCAAAGCTTATGGGCCTAAAGTGGACATCTGGTCTTTGGGCATCATGGCTATAGAGATGATTGAGGGAGAGCCTCCGTATCTCAACGAGAATCCTCTGAGGGCGCTGTATCTCATTGCCACTAACGGAACTCCAGAACTGCAGAATCCTGAGAAACTCTCGTCAGTTTTCCGGGATTTCCTCAACCGCTGTCTGGAGATGGACGTGGAGAAAAGAGGCTCTGCCAAAGAGCTTTTACAGCATCAGTTCCTCAAAGTGGCCAAACCTCTGTCCAGCCTGACGCCGCTCATACTGGCAGCCAAAGAGGCGACCAAGAACAACCGCTAAGCAGCCGGCCTGAAGCCCAGCCCACCTCCACACTGCCCGCCCCCGACCTCGATCACCCCTCACCCCTCTCTATTTCACCCCTTTTTCAGAGGGGTCTGTAGTGGGCGGAGCCTCTAGAGGGTCCCTTCCACTTCTGCTTGTACTGTTGGGTCCCGGGGTGAATGTGACCCCGCCCAGAGGTCACCAAAGAGGCTGAGAGAATGACGGCATCAAAcgaaaatacataaataaacgaAAGTGAAAACAAATGAAGAATTAAAGAAATTGGAGAAATTTGAGAAATTGAAGAATCAGCTTGCGGCTGCTCAACTTTTGGATATTAGGAGCGAATCTGCCAGACTGACTGattcagttttgttttgagCACAGGTTcgcttgttttgtttgtttcatttgtttgattttttttccgtCTGTCAGTCTGTGTGTTCGTTTATTAATGTGTTCTGAATGTGGGCTTTAGTTTgatgtctctattttttttttggtttaatttttgCTCCTTTTTGTACTgtatctgtgagtgtgtgtgtgtgagctaaAGGGGGAGTAAATTAGCTGCGATATGATTGGATGAGACAGAAGTGAACGTTGGTACGCATGCTGGTACGGACTGCGGAGGTGCAGAAGCGAATGgtgtaaatgaataaacagcACGTAACGAGAGCATTAGAATGGATGCCtgtgcatgaaaaaaataaaataaaatgacggAAAGCATCCCCACTTCCGTTCCATGAAACCTGCCACTCCTgcaagccccgcccctccctccGCCCTTCAAAAAGCCCAGGATGTACATTTCTTACTGACAGACAAGCTGAAAAGACAACATTCCACGCAAAGTTGTCCATGAACTCGGTTGATCTTTACGTAGCAGATTCTGTGTCGTCACAAACACTGAGTTAATGTTCatgtttaaagaaaagaaaaaagaagaaaagagaagaagaattCTGTTTTAAgcccattgtttttttatgtagcgTCGACTCGACATACCCTTTGGCCTTAAACTGTGACACAGAGGGAAGAAGACTCTGCAAAGATGGTACAGCCCACTGTCTACTGTCTCTGAACCGTCATCTCCTTTACTGAAGGATGGGAGGAGGATGAAGATGTTAGCCAGGGAGAAAATCTCTGTAAAGAGAAGTCTTGCTGTGTTTTTGAGCCATAAACTCTTGTTTGTAAGGCATTTTGATTCATTAATTACTAAAAAATCTTATCTGAAGAGGAAGAataaacaaaatgtacaaaatgatTCCCAATAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04409 PAK1; p21-activated kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424557 lncRNA upstream 22397 1439258 ~ 1439566 (+) True G308388
TU424475 lncRNA upstream 123622 1337388 ~ 1338341 (+) True G308324
TU424471 lncRNA upstream 178190 1282837 ~ 1283773 (+) True G308322
TU424466 lncRNA upstream 197943 1263139 ~ 1264020 (+) True G308317
TU424461 lncRNA upstream 235140 1226205 ~ 1226823 (+) True G308312
TU424622 lncRNA downstream 66695 1631159 ~ 1632002 (+) True G308441
TU424621 lncRNA downstream 66886 1631350 ~ 1631758 (+) False G308441
TU424626 lncRNA downstream 79370 1643834 ~ 1645171 (+) True G308444
TU424630 lncRNA downstream 172976 1737440 ~ 1741024 (+) True G308448
TU424635 lncRNA downstream 207440 1771904 ~ 1784753 (+) True G308453
XM_007257762.3 mRNA upstream 13233 1440773 ~ 1448730 (+) True clns1a
XM_015607997.2 mRNA upstream 13952 1440770 ~ 1448011 (+) False clns1a
XM_022665967.1 mRNA upstream 27031 1416342 ~ 1434932 (+) True rsf1
XM_022665983.1 mRNA upstream 60692 1377606 ~ 1401271 (+) True ints4
XM_022665984.1 mRNA upstream 60692 1377609 ~ 1401271 (+) False ints4
XM_022665965.1 mRNA downstream 20998 1585462 ~ 1634209 (+) True LOC103038299
XM_022665966.1 mRNA downstream 20998 1585462 ~ 1634007 (+) False LOC103038299
XM_022665989.1 mRNA downstream 180856 1745320 ~ 1750243 (+) True omp
XM_007257763.2 mRNA downstream 222852 1787316 ~ 1790876 (+) True LOC103029868
XM_007257764.3 mRNA downstream 263440 1827904 ~ 1832674 (+) True serp1
TU424184 other upstream 1275888 185337 ~ 186075 (+) True G308090
TU424711 other downstream 453000 2017464 ~ 2020131 (+) True G308506
TU424747 other downstream 566615 2131079 ~ 2143963 (+) True G308535
TU424887 other downstream 755427 2319891 ~ 2338166 (+) True G308643
TU424927 other downstream 991863 2556327 ~ 2556569 (+) True G308680

Expression Profile