G308521


Basic Information

Item Value
gene id G308521
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2087108 ~ 2088169 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU424730
tagatagaaagatagatagatacttcattgatcccgaaggaaatttatcAATGCTGCATGCTGCTAAAGATCAAACCTGCAGACTACAGCGGATGATAGACAAACCAgtatgtctattaaatgcaattgaactgcAAGGTGAAAGTAAACGATACTCTATAGAATGTACCCCTACATCCAACACTAACCCAAACTCttatattaacatttaatcTTAACTAAATTCAGGGATAGTTTTGCgttttagattaaggtttgAGTTAGGcttagttttaagttttagattaaggtttgAGTTAGggttagtttttagttttagattaaggtttgagttagggttaggtaaatgtttttatcaatcagcatcatttacattcatttaagAGTTAAGTTGCAGACACTCATTTGCTcatttgaatgttagttgagcatctatgaggcatctgtggaccatccaaataaagtgatgccgttttctttttttagttatttttatttgttgctttttttcttccggatttacagaaacacaaataaagtCTGTCTTTTGGAGTAAACTTGAGTATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424730 True 568 lncRNA 0.32 2 2087108 2088169

Neighbor

gene id symbol gene type direction distance location
LOC103031553 pcyt1a,LOC108440592,LOC108264716,LOC107091881 coding upstream 239524 1834677 ~ 1847584 (+)
LOC103029868 NA coding upstream 296232 1787316 ~ 1790876 (+)
omp omp,ompa,LOC107660685,LOC107735103 coding upstream 336865 1745320 ~ 1750243 (+)
LOC103038299 gdpd4a,LOC108431176,LOC108264809,LOC107735911,LOC107660699 coding upstream 452899 1585462 ~ 1634209 (+)
pak1 pak1 coding upstream 522644 1461963 ~ 1564464 (+)
eif3m eif3m,LOC107602127,LOC107671036 coding downstream 133800 2221969 ~ 2236883 (+)
pex16 pex16,LOC107753012,LOC107669959,LOC106593118 coding downstream 905899 2994068 ~ 3009972 (+)
LOC103038331 LOC108433450 coding downstream 930990 3019159 ~ 3035820 (+)
cep126 NA coding downstream 982067 3070236 ~ 3107407 (+)
G308501 rnpepl1 non-coding upstream 88361 1997233 ~ 1998747 (+)
G308474 NA non-coding upstream 152990 1862898 ~ 1934118 (+)
G308470 NA non-coding upstream 176463 1854641 ~ 1910645 (+)
G308457 NA non-coding upstream 263513 1789538 ~ 1823595 (+)
G308552 NA non-coding downstream 106822 2194991 ~ 2195304 (+)
G308549 NA non-coding downstream 110671 2198840 ~ 2207792 (+)
G308640 NA non-coding downstream 158142 2246311 ~ 2265533 (+)
G308645 NA non-coding downstream 212773 2300942 ~ 2301238 (+)
G308649 NA non-coding downstream 265958 2354127 ~ 2409980 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other upstream 66977 2017464 ~ 2020131 (+)
serp1 NA other upstream 254434 1827904 ~ 1832674 (+)
G308090 NA other upstream 1901033 185337 ~ 186075 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 42910 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 231722 2319891 ~ 2338166 (+)
G308680 NA other downstream 468158 2556327 ~ 2556569 (+)

Expression


Co-expression Network