G308730


Basic Information

Item Value
gene id G308730
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2764345 ~ 2850667 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU425001
ctgaaacacctgtcatcattttagtgtgggattttaggtttcatggctaaattagagcagcctggtgttcaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcaattatcagggtaagagcacagttctgctctaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcgagataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacataaaaccacggctgatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU425001 True 477 lncRNA 0.44 2 2764345 2850667

Neighbor

gene id symbol gene type direction distance location
eif3m eif3m,LOC107602127,LOC107671036 coding upstream 527462 2221969 ~ 2236883 (+)
cstf3 cstf3,LOC107671440 coding upstream 651361 2076601 ~ 2112984 (+)
LOC103031553 pcyt1a,LOC108440592,LOC108264716,LOC107091881 coding upstream 916761 1834677 ~ 1847584 (+)
LOC103029868 NA coding upstream 973469 1787316 ~ 1790876 (+)
omp omp,ompa,LOC107660685,LOC107735103 coding upstream 1014102 1745320 ~ 1750243 (+)
pex16 pex16,LOC107753012,LOC107669959,LOC106593118 coding downstream 143401 2994068 ~ 3009972 (+)
LOC103038331 LOC108433450 coding downstream 168492 3019159 ~ 3035820 (+)
cep126 NA coding downstream 219569 3070236 ~ 3107407 (+)
G308719 NA non-coding upstream 31278 2678477 ~ 2733067 (+)
G308715 NA non-coding upstream 85975 2613447 ~ 2678370 (+)
G308714 NA non-coding upstream 86140 2676799 ~ 2678205 (+)
G308712 NA non-coding upstream 151393 2612738 ~ 2612952 (+)
G308685 NA non-coding upstream 164791 2599323 ~ 2599554 (+)
G308768 NA non-coding downstream 2832 2853499 ~ 2864281 (+)
G308769 NA non-coding downstream 13911 2864578 ~ 2912250 (+)
G308777 NA non-coding downstream 50589 2901256 ~ 2901826 (+)
G308780 NA non-coding downstream 63238 2913905 ~ 2914277 (+)
G308782 NA non-coding downstream 109938 2960605 ~ 2960810 (+)
G308680 NA other upstream 207776 2556327 ~ 2556569 (+)
G308643 kifc3 other upstream 426179 2319891 ~ 2338166 (+)
G308535 depdc7,LOC107758055,LOC107576633 other upstream 620382 2131079 ~ 2143963 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other upstream 744214 2017464 ~ 2020131 (+)
serp1 NA other upstream 931671 1827904 ~ 1832674 (+)

Expression


Co-expression Network