G308712


Basic Information

Item Value
gene id G308712
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2612738 ~ 2612952 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU424981
cctgtccttttttcacctcctggacctgagcatgaacttcagagcagctgtttactgtttctccactccagcaaaagatgctccacatatgagctgctaactcatccatttataaccctttataaagctacgagtctctcctctctctaatatgaggtttttgttgttggtgaagaaggagacgtttatacaggtatcaatgtgcagcaggTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424981 True 215 lncRNA 0.43 1 2612738 2612952

Neighbor

gene id symbol gene type direction distance location
eif3m eif3m,LOC107602127,LOC107671036 coding upstream 375855 2221969 ~ 2236883 (+)
cstf3 cstf3,LOC107671440 coding upstream 499754 2076601 ~ 2112984 (+)
LOC103031553 pcyt1a,LOC108440592,LOC108264716,LOC107091881 coding upstream 765154 1834677 ~ 1847584 (+)
LOC103029868 NA coding upstream 821862 1787316 ~ 1790876 (+)
omp omp,ompa,LOC107660685,LOC107735103 coding upstream 862495 1745320 ~ 1750243 (+)
pex16 pex16,LOC107753012,LOC107669959,LOC106593118 coding downstream 381116 2994068 ~ 3009972 (+)
LOC103038331 LOC108433450 coding downstream 406207 3019159 ~ 3035820 (+)
cep126 NA coding downstream 457284 3070236 ~ 3107407 (+)
G308685 NA non-coding upstream 13184 2599323 ~ 2599554 (+)
G308683 NA non-coding upstream 39949 2572404 ~ 2572789 (+)
G308682 NA non-coding upstream 51568 2560906 ~ 2561170 (+)
G308681 NA non-coding upstream 55356 2557082 ~ 2557382 (+)
G308679 NA non-coding upstream 64874 2547599 ~ 2547864 (+)
G308715 NA non-coding downstream 495 2613447 ~ 2678370 (+)
G308714 NA non-coding downstream 63847 2676799 ~ 2678205 (+)
G308719 NA non-coding downstream 65525 2678477 ~ 2733067 (+)
G308730 NA non-coding downstream 151393 2764345 ~ 2850667 (+)
G308768 NA non-coding downstream 240547 2853499 ~ 2864281 (+)
G308680 NA other upstream 56169 2556327 ~ 2556569 (+)
G308643 kifc3 other upstream 274572 2319891 ~ 2338166 (+)
G308535 depdc7,LOC107758055,LOC107576633 other upstream 468775 2131079 ~ 2143963 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other upstream 592607 2017464 ~ 2020131 (+)
serp1 NA other upstream 780064 1827904 ~ 1832674 (+)

Expression


Co-expression Network